Clari Reference Architecture Agent Skill

Bulk Rnaseq

by K-Dense-AI

×1

End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathway-enrichment), and publication figures (scientific-visualization). Use whenever the user has bulk RNA-seq reads or quant output and wants a complete, reproducible differential-expression workflow — e.g. "analyze my RNA-seq", "FASTQ to DESeq2", "run nf-core/rnaseq", "STAR/Salmon quantification", "build a counts matrix for DESeq2", or "go from reads to differentially expressed genes and enriched pathways". Routes between an nf-core/rnaseq (Nextflow) path and a standalone STAR/Salmon path, and covers experimental design, strandedness, and QC gates. For single-cell RNA-seq use the scanpy skill instead.

Generate Status Report

by openai

vendor ×1

Generate project status reports from Jira issues and publish to Confluence. When an agent needs to: (1) Create a status report for a project, (2) Summarize project progress or updates, (3) Generate weekly/daily reports from Jira, (4) Publish status summaries to Confluence, or (5) Analyze project blockers and completion. Queries Jira issues, categorizes by status/priority, and creates formatted reports for delivery managers and executives.

Us Market Bubble Detector

by nicepkg

×1

Evaluates market bubble risk through quantitative data-driven analysis using the revised Minsky/Kindleberger framework v2.1. Prioritizes objective metrics (Put/Call, VIX, margin debt, breadth, IPO data) over subjective impressions. Features strict qualitative adjustment criteria with confirmation bias prevention. Supports practical investment decisions with mandatory data collection and mechanical scoring. Use when user asks about bubble risk, valuation concerns, or profit-taking timing.

Gws Workflow Standup Report

by googleworkspace

vendor

Google Workflow: Today's meetings + open tasks as a standup summary.

Recipe Create Events From Sheet

by googleworkspace

vendor

Read event data from a Google Sheets spreadsheet and create Google Calendar entries for each row.

Baoyu Diagram

by JimLiu

Create professional, dark-themed SVG diagrams of any type — architecture diagrams, flowcharts, sequence diagrams, structural diagrams, mind maps, timelines, illustrative/conceptual diagrams, and more. Use this skill whenever the user asks for any kind of technical or conceptual diagram, visualization of a system, process flow, data flow, component relationship, network topology, decision tree, org chart, state machine, or any visual representation of structure/logic/process. Also trigger when the user says "画个图" "画一个架构图" "diagram" "flowchart" "sequence diagram" "draw me a ..." or uploads content and asks to visualize it. Output is always a standalone .svg file.

Start

by anthropics

vendor

Initialize the productivity system and open the dashboard. Use when setting up the plugin for the first time, bootstrapping working memory from your existing task list, or decoding the shorthand (nicknames, acronyms, project codenames) you use in your todos.

Status Report

by anthropics

vendor

Generate a status report with KPIs, risks, and action items. Use when writing a weekly or monthly update for leadership, summarizing project health with green/yellow/red status, surfacing risks and decisions that need stakeholder attention, or turning a pile of project tracker activity into a readable narrative.