Pathway Commons MCP Server

by mrfentmen Your server? Claim it

local only

Pathway Commons MCP runs on your own machine — the client starts it, so there is no endpoint to ping. 94 installs a week from npm. Last commit 8 Nov 2026.

Pathway Commons graph search: find pathways, proteins and complexes by name

Installs per day peak 504 · avg 21 · -83% w/w

a month agotoday

Installs / week

npm · @mrfentmen/pathway-commons-mcp

Stars

0 open issues

8 Nov 2026

Last commit

3 releases in 90 days

—

License

TypeScript

Nothing serious here today

Today is the operative word: we check Pathway Commons MCP every 15 minutes and re-read its code on every release. Watch it and you find out the day that stops being true.

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

Claude Code Claude Desktop Codex Cursor VS Code

run in your terminal

claude mcp add pathway-commons-mcp -- npx -y @mrfentmen/pathway-commons-mcp

~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

~/.codex/config.toml

[mcp_servers.pathway-commons-mcp]
command = "npx"
args = ["-y", "@mrfentmen/pathway-commons-mcp"]

.cursor/mcp.json

{
  "mcpServers": {
    "pathway-commons-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "pathway-commons-mcp": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@mrfentmen/pathway-commons-mcp"
      ]
    }
  }
}

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Pathway Commons MCP — questions

Answers built from our own checks of this server.

Why is there no uptime for Pathway Commons MCP?

Pathway Commons MCP runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the npm package @mrfentmen/pathway-commons-mcp was installed 94 times last week.

How do I connect Pathway Commons MCP?

Copy the ready config from this page. We generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each in the form that client actually reads. It runs locally, so the command pulls @mrfentmen/pathway-commons-mcp straight from npm; nothing to host, nothing to sign up for.

How many people use Pathway Commons MCP?

The npm package @mrfentmen/pathway-commons-mcp was installed 94 times in the last week. Week over week that is -83%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.

Is Pathway Commons MCP open source?

We cannot say either way: written in TypeScript and 0 stars on GitHub, but we could not determine the licence, and without one the code is not open source by default.