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PhysiCell Configuration Builder MCP Server

local only

PhysiCell Configuration Builder runs on your own machine — the client starts it, so there is no endpoint to ping. 1 158 installs a week from pypi. Last commit 28 Oct 2026.

MCP server for building, inspecting, and exporting PhysiCell and PhysiBoSS configuration files

Installs per day peak 534 · avg 101 · -3% w/w
a month agotoday
1 158
Installs / week
pypi · mcp-biomodelling-servers
20
Stars
0 open issues
28 Oct 2026
Last commit
from GitHub
GPL-3.0
License
Python

What the code does

We read the source, 5 d ago · rules 995398eba69f

Capabilities

What this server is able to do. For an MCP server this is often the job itself — a terminal server runs commands because that is what it is for. Listed so you know what you are plugging in, not as an accusation.

        process = subprocess.Popen(

Is this your server and something here is wrong? Tell us — corrections are free and do not require a plan.

This code can reach further than it looks

We found places where it runs commands, builds paths or queries from values it is given. None of that is a flaw by itself — it becomes one when the code changes, and code changes quietly between releases. We re-read it on every one.

Three servers free · no card

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

run in your terminal
claude mcp add PhysiCell -- uvx mcp-biomodelling-servers
~/Library/Application Support/Claude/claude_desktop_config.json
{
  "mcpServers": {
    "PhysiCell": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers"
      ]
    }
  }
}
~/.codex/config.toml
[mcp_servers.PhysiCell]
command = "uvx"
args = ["mcp-biomodelling-servers"]
.cursor/mcp.json
{
  "mcpServers": {
    "PhysiCell": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers"
      ]
    }
  }
}
.vscode/mcp.json
{
  "servers": {
    "PhysiCell": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers"
      ]
    }
  }
}

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PhysiCell Configuration Builder — questions

Answers built from our own checks of this server.

Why is there no uptime for PhysiCell Configuration Builder?
PhysiCell Configuration Builder runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the pypi package mcp-biomodelling-servers was installed 1 158 times last week.
How do I connect PhysiCell Configuration Builder?
Copy the ready config from this page. We generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each in the form that client actually reads. It runs locally, so the command pulls mcp-biomodelling-servers straight from pypi; nothing to host, nothing to sign up for.
How many people use PhysiCell Configuration Builder?
The pypi package mcp-biomodelling-servers was installed 1 158 times in the last week. Week over week that is -3%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.
Is PhysiCell Configuration Builder open source?
Yes — it is published under the GPL-3.0 licence, written in Python and 20 stars on GitHub. The source link is on this page, so you can read exactly what it does with your data before you connect it.