Appendix Table Writer

Appendix Table Writer (publishable survey tables)

Why this exists

The pipeline can produce index tables that are useful for planning/debugging, but read like internal artifacts.

This skill writes publishable, reader-facing tables that can live in an Appendix:

• cleaner layout
• higher information density
• survey-style organization (methods/benchmarks/risks), not intermediate state

Index tables remain in outline/tables_index.md and should not be copied verbatim into the paper.

Inputs

• outline/table_schema.md (table intent + evidence mapping)
• outline/tables_index.md (internal index; optional but recommended)
• outline/subsection_briefs.jsonl
• outline/evidence_drafts.jsonl
• outline/anchor_sheet.jsonl
• citations/ref.bib
• Optional: GOAL.md

Read as needed:

• references/table_cell_hygiene.md when Appendix table cells still copy raw paper self-narration or generic result wrappers

Machine-readable assets:

• assets/table_cell_hygiene.json

Output

• outline/tables_appendix.md

Roles (use explicitly)

Survey Table Curator (reader lens)

Mission: choose tables a reader actually wants in a survey Appendix.

Do:

• prefer 2-3 tables that answer big questions (methods, evaluation, risks)
• make rows comparable (same row unit across the table)
• make the table legible without reading the whole paper

Avoid:

• one-row-per-H3 index dumps
• columns named like internal axes ("axes", "blocking_missing", "evidence readiness")

Production Editor (layout)

Mission: make the table look publishable in LaTeX.

Do:

• keep columns <= 4
• keep cells short (phrases, not sentences)
• use <br> sparingly (0-1 per cell; never a list dump)

Avoid:

• 6-8 columns with tiny unreadable text
• cells that look like notes (semicolon chains + slash lists + long parentheticals)
• slash-separated axis markers (A/B/C) in captions/headers/cells (post-merge voice gate will flag them); use commas or 'and' instead
• internal axis jargon that reads like an intermediate artifact once printed (e.g., calling table columns "tokens"); prefer "protocol details/metadata/assumptions"

Evidence Steward (verifiability)

Mission: prevent hallucinations.

Do:

• every row must include citations in a dedicated column (e.g., "Key refs")
• only restate what appears in evidence packs / anchor sheet
• when evidence is thin, prefer fewer rows with stronger grounding

Avoid:

• "representative works" with no supporting claim in packs/anchors
• adding benchmark/method details not present upstream

Table contract (publishable, Appendix-ready)

outline/tables_appendix.md must:

• contain >=1 Markdown table for course_paper, or >=2 for survey / deep
• use a caption line before each table, e.g. Appendix Table A1. Representative systems by method family and evaluation setting
• contain no headings (#, ##, ###) inside the file (the merger adds an Appendix heading)
• contain no placeholders (TODO, TBD, FIXME, ASCII three-dot ellipsis, unicode ellipsis)
• contain citations in rows using [@BibKey] (keys must exist in citations/ref.bib)
• avoid pipeline jargon and index-like column names

Workflow (explicit inputs)

• Start from GOAL.md (scope) and outline/table_schema.md (what each table must answer).
• Read queries.md:draft_profile when present; course_paper uses one strong reader table by default, while survey / deep retain at least two.
• Use outline/tables_index.md as a shortlist source, but do not paste it verbatim.
• Fill rows/cells using outline/subsection_briefs.jsonl, outline/evidence_drafts.jsonl, and outline/anchor_sheet.jsonl (no guessing).
• Validate every cited key against citations/ref.bib.

Recommended Appendix tables (default set)

If you are unsure what to build, start with these two:

1) Method/architecture map (representative works)

• Row unit: work/system line (not H3 id)
• Columns (example):
• Work (short name)
• Core idea (1 short phrase)
• Loop + interface assumptions (1 short phrase; reader-facing)
• Key refs (2-4 cite keys)

2) Evaluation protocol / benchmark map

• Row unit: benchmark / evaluation setting (or a canonical protocol dimension if benchmarks are thin)
• Columns (example):
• Benchmark / setting
• Task + metric (phrases, not definitions)
• Key protocol constraints (budget/cost/latency/steps/tool access/threat model)
• Key refs (2-4 cite keys)

Optional third (only if it stays clean):

3) Risk / threat-surface map

• Row unit: threat/failure mode category
• Columns: surface; why it matters; mitigation pattern; key refs

Positive / negative examples (style)

Bad (index table / internal notes):

• Column: "Axes"
• Cell: planning / memory / tools / eval / safety (slash dump)
• Rows: every H3 id with 5+ <br> lines

Good (survey table):

• Column labels are reader-facing ("Core idea", "Task + metric", "Constraint")
• Cells are short phrases (no narration)
• A reader can scan and compare rows quickly

Also good (avoid intermediate-artifact tells):

• Don't label columns as "token(s)". If you need the idea, rewrite as "protocol details/metadata/assumptions".
• Avoid ASCII arrows like -> inside cells; prefer natural phrasing (e.g., "interleaves reasoning traces with tool actions").

When to stop / route upstream

If you cannot fill a row without guessing:

• remove the row (prefer fewer, solid rows), and
• route upstream: strengthen evidence-draft / anchor-sheet for that area.

Script (generator + validator)

Quick Start

• uv run python .codex/skills/appendix-table-writer/scripts/run.py --help
• uv run python .codex/skills/appendix-table-writer/scripts/run.py --workspace <workspace>

All Options

• --workspace <workspace> (required)
• --unit-id <id> (optional; used only for runner bookkeeping)
• --inputs <a;b;c> (optional; ignored by the validator; kept for runner compatibility)
• --outputs <relpath> (optional; defaults to outline/tables_appendix.md)
• --checkpoint <C#> (optional; ignored by the validator)

Examples

• Validate the default appendix tables file:

uv run python .codex/skills/appendix-table-writer/scripts/run.py --workspace workspaces/e2e-agent-survey-latex-verify-YYYYMMDD-HHMMSS

• Validate a workspace that writes appendix tables to a non-standard path:

uv run python .codex/skills/appendix-table-writer/scripts/run.py --workspace <workspace> --outputs outline/tables_appendix.md

Notes:

• This script writes outline/tables_appendix.md from the existing evidence artifacts and then validates the result.
• It always writes a short report to output/TABLES_APPENDIX_REPORT.md.