Monitor running experiments, check progress, collect results. Use when user says \"check results\", \"is it done\", \"monitor\", or wants experiment output.
npx skills add https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep --skill monitor-experiment
Monitor: $ARGUMENTS
First identify the backend from AGENTS.md, run notes, or launch summary: local, SSH, Vast.ai, or Modal. Monitor the backend that was actually used; do not assume a plain SSH screen session when the run was launched through Vast.ai or Modal.
ssh <server> "screen -ls"
For Vast.ai, also check instance state, SSH reachability, hourly cost, and whether auto_destroy is pending. For Modal, check the Modal run/app logs, function status, timeout, volume outputs, and cloud cost exposure.
For each screen session, capture the last N lines:
ssh <server> "screen -S <name> -X hardcopy /tmp/screen_<name>.txt && tail -50 /tmp/screen_<name>.txt"
If hardcopy fails, check for log files or tee output.
ssh <server> "ls -lt <results_dir>/*.json 2>/dev/null | head -20"
If JSON results exist, fetch and parse them:
ssh <server> "cat <results_dir>/<latest>.json"
wandb: true in AGENTS.md)If the project enables W&B, pull metrics before interpreting results. Prefer W&B as the source of training curves and recent eval state, while still checking logs for crashes.
List recent runs:
python3 - <<'PY'
import wandb
api = wandb.Api()
for run in api.runs("<entity>/<project>", per_page=20):
print(run.name, run.state, run.url)
PY
Pull recent history for a specific run:
python3 - <<'PY'
import wandb
api = wandb.Api()
run = api.run("<entity>/<project>/<run_id>")
for row in run.history(samples=50, keys=["train/loss", "eval/loss", "eval/accuracy", "train/lr"]):
print(row)
print("summary:", dict(run.summary))
PY
If W&B is configured but unavailable, report the connectivity problem and fall back to screen/log/json evidence. Do not interpret missing W&B data as experiment failure by itself.
Always include W&B dashboard links (run.url) when available so later review and paper-writing agents can inspect the exact training curves.
Present results in a comparison table:
| Experiment | Metric | Delta vs Baseline | Status |
|-----------|--------|-------------------|--------|
| Baseline | X.XX | — | done |
| Method A | X.XX | +Y.Y | done |
After results are collected, check ~/.codex/feishu.json:
experiment_done notification: results summary table, delta vs baseline"off": skip entirely (no-op)Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
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Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take wanshuiyin/auto-claude-code-research-in-sleep-monitor-experiment from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.