Start a ralph style looping session
npx skills add https://github.com/sterlingcrispin/claude_slash_commands --skill ralphinit
You are initializing a new project for agent-driven development. The user has provided a current_SYSTEM-PLAN.md file in the current working directory that describes the system architecture and goals.
Read current_SYSTEM-PLAN.md and create two companion documents:
These three current_* files will serve as the foundation for an automated agent that works in a continuous development loop, picking up tasks and making progress incrementally.
First, read current_SYSTEM-PLAN.md in the current directory to understand:
Write a comprehensive PRD with testable requirements extracted from the system plan. Structure it as:
# [Project Name] - Product Requirements Document
**Last Updated:** [today's date]
---
## Requirements
[
{
"category": "functional|integration|architecture|performance|usability|maintainability|milestone|constraint",
"description": "Clear, testable requirement statement",
"steps": [
"Step 1 to verify this requirement",
"Step 2...",
"Step 3...",
"Step 4...",
"Step 5..."
],
"passes": false
},
...
]
## Summary Statistics
| Category | Count |
|----------|-------|
| Functional | X |
| Integration | X |
| ... | ... |
| **Total** | **X** |
## Development Stages Mapping
Map requirements to development stages from the system plan.
## Open Questions
List any ambiguities or decisions that need user input.
"passes": falsefunctional, integration, architecture, performance, usability, maintainability, milestone, constraintWrite a progress journal structured for continuous agent development:
# [Project Name] Progress Journal
**Purpose:** Track progress on implementation. Useful for context continuity between sessions.
**Last Updated:** [today's date]
---
## Current Status: [STAGE NAME] NOT STARTED
Brief description of where we are.
---
## Project Context Quick Reference
### What We Have
- Key existing assets (data, models, infrastructure)
### Key Files
- List important files and their purposes
### Core Design Decisions (from plan)
1. Decision 1
2. Decision 2
...
---
## Development Stages Checklist
### Stage 1: [Name]
**Goal:** [from system plan]
- [ ] Task 1
- [ ] Task 2
- [ ] Task 3
**Validation:** [how to know this stage is complete]
---
### Stage 2: [Name]
...
---
## Session Log
### [Date] - Session 1
**Work Done:**
- (empty - will be filled as work progresses)
**Next Session Should:**
- Start with first task from Stage 1
---
## Architecture Quick Reference
[Include a simplified architecture diagram or component list from the system plan]
---
## Key Interfaces (for quick reference)
[Extract key interfaces/APIs from the system plan that the agent will need to implement]
---
## Notes & Decisions Log
*Add notes here as implementation decisions are made*
---
## Open Questions
[Copy from system plan or identify new ones]
After creating both files:
current_PRD.md and current_PROGRESS.mdIntegration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take sterlingcrispin/ralphinit from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.