Query pro-workflow wikis via SQLite FTS5 BM25 retrieval. Returns top-K passages with citations. Use when answering a question that any of the user's wikis already covers, when the user says "what does the wiki say about X", "ask wiki", "search wikis", or before drafting a new wiki page (to avoid duplication).
npx skills add https://github.com/rohitg00/pro-workflow --skill wiki-query
FTS5 BM25 retrieval over wiki pages indexed by wiki-builder.
SessionStart auto-load when prompt matches a known wiki topicnode $SKILL_ROOT/scripts/query.js search "<query>" [--wiki <slug>] [--limit 10] [--json]
node $SKILL_ROOT/scripts/query.js related <slug> <rel-path> [--limit 5]
node $SKILL_ROOT/scripts/query.js show <slug> <rel-path>
search with no --wiki ranks across all wikis. related finds adjacent pages by reusing the page's title + summary as the query.
JSON-friendly. Each hit:
{
"page_id": 12,
"wiki_slug": "agent-memory",
"rel_path": "wiki/concepts/episodic-memory.md",
"title": "Episodic Memory",
"snippet": "... [time-stamped] traces, distinct from semantic ...",
"rank": -3.21
}
Lower (more negative) rank = better BM25 match.
Every wiki hit must be cited as:
[wiki:<slug>] <title> — `<rel_path>`
Do not paraphrase a hit without showing the source.
When pro-workflow's SessionStart hook detects wiki-relevant terms in the user prompt, it runs query.js search "<prompt>" --limit 3 and injects top hits into the session as a hint:
[wiki-query] 3 relevant pages:
- agent-memory · wiki/concepts/episodic-memory.md
- agent-memory · wiki/papers/park-2023-generative-agents.md
- ...
Helps Claude recall existing knowledge instead of redoing research.
--snippet-len.Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
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Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.
Take rohitg00/wiki-query from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.