Stage, commit, push, open a PR, and merge to main. Use ONLY on explicit commit intent — user says "commit", "ship it", "push this", "open a PR", "merge to main", "let's commit this", or prefixes with `/commit`. Do NOT auto-invoke on vague end-of-task phrases ("we're done", "wrap up") — those require explicit confirmation first. Runs the standard commit-PR-merge cycle; never force-pushes or skips hooks.
npx skills add https://github.com/pedrohcgs/claude-code-my-workflow --skill commit
Stage changes, verify quality gates, commit with a descriptive message, create a PR, and merge to main.
Run before branching. For every changed .qmd, .tex, or .R file that has quality rubrics, run:
python3 scripts/quality_score.py <changed-file-paths>
Spawn the verifier agent (via Task with subagent_type=verifier) to run compilation/render checks on the changed files. Report pass/fail before committing.
Runs unconditionally. Enforces that count claims ("14 agents, 28 skills, 24 rules, 6 hooks" and siblings) across README.md, CLAUDE.md, the guide source + rendered HTML, the landing page, and the skill template all agree with the on-disk counts of .claude/{skills,agents,rules,hooks}:
./scripts/check-surface-sync.sh
git status
git diff --stat
git log --oneline -5
git checkout -b <short-descriptive-branch-name>
Add specific files (never use git add -A):
git add <file1> <file2> ...
Do NOT stage .claude/settings.local.json or any files containing secrets.
If $ARGUMENTS is provided, use it as the commit message. Otherwise, analyze the staged changes and write a message that explains *why*, not just *what*.
git commit -m "$(cat <<'EOF'
<commit message here>
EOF
)"
git push -u origin <branch-name>
gh pr create --title "<short title>" --body "$(cat <<'EOF'
## Summary
<1-3 bullet points>
## Test plan
<checklist>
🤖 Generated with [Claude Code](https://claude.com/claude-code)
EOF
)"
gh pr merge <pr-number> --merge --delete-branch
git checkout main
git pull
Report the PR URL and what was merged.
main. If the user insists on skipping, record their override reason in the commit message.settings.local.json and sensitive files from staging.--merge (not --squash or --rebase) unless asked otherwise.$ARGUMENTS is provided, use it exactly.Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take pedrohcgs/commit from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.