Search Tool Hierarchy
npx skills add https://github.com/parcadei/Continuous-Claude-v3 --skill search-tools
When searching code, use this decision tree:
Need CONCEPTUAL/SEMANTIC search?
(how does X work, find patterns, understand architecture)
→ Use LEANN (/leann-search) - embedding-based semantic search
→ PreToolUse hook auto-redirects semantic Grep queries
Need to understand code STRUCTURE?
(find function calls, class usages, refactor patterns)
→ Use AST-grep (/ast-grep-find)
Need to find TEXT in code?
→ Use Morph (/morph-search) - 20x faster
→ If no Morph API key: fall back to Grep tool
Simple one-off search?
→ Use built-in Grep tool directly
| Tool | Best For | Requires |
|------|----------|----------|
| LEANN | Semantic search: "how does caching work", "error handling patterns", conceptual queries | Index built |
| AST-grep | Structural patterns: "find all calls to foo()", refactoring, find usages by type | MCP server |
| Morph | Fast text search: "find files mentioning error", grep across codebase | API key |
| Grep | Literal patterns, class/function names, regex | Nothing (built-in) |
LEANN (semantic/conceptual):
AST-grep (structural):
Morph (text search):
Grep (literal):
class ProviderAdapterdef __init__# Search with semantic query
leann search opc-dev "how does blackboard communication work" --top-k 5
# List available indexes
leann list
# Rebuild index (when code changes)
leann build opc-dev --docs dir1 dir2 --no-recompute --no-compact --force
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take parcadei/search-tools from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.