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Peft Fine Tuning Agent Skill

by Orchestra-Research

Parameter-efficient fine-tuning for LLMs using LoRA, QLoRA, and 25+ methods. Use when fine-tuning large models (7B-70B) with limited GPU memory, when you need to train <1% of parameters with minimal accuracy loss, or for multi-adapter serving. HuggingFace's official library integrated with transformers ecosystem.

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Install

one command, takes just this skill from the repository 
npx skills add https://github.com/Orchestra-Research/AI-Research-SKILLs --skill peft-fine-tuning

The instruction itself

32 sections, as written by the author

PEFT (Parameter-Efficient Fine-Tuning)

Fine-tune LLMs by training <1% of parameters using LoRA, QLoRA, and 25+ adapter methods.

When to use PEFT

Use PEFT/LoRA when:

  • Fine-tuning 7B-70B models on consumer GPUs (RTX 4090, A100)
  • Need to train <1% parameters (6MB adapters vs 14GB full model)
  • Want fast iteration with multiple task-specific adapters
  • Deploying multiple fine-tuned variants from one base model

Use QLoRA (PEFT + quantization) when:

  • Fine-tuning 70B models on single 24GB GPU
  • Memory is the primary constraint
  • Can accept ~5% quality trade-off vs full fine-tuning

Use full fine-tuning instead when:

  • Training small models (<1B parameters)
  • Need maximum quality and have compute budget
  • Significant domain shift requires updating all weights

Quick start

Installation

# Basic installation
pip install peft

# With quantization support (recommended)
pip install peft bitsandbytes

# Full stack
pip install peft transformers accelerate bitsandbytes datasets

LoRA fine-tuning (standard)

from transformers import AutoModelForCausalLM, AutoTokenizer, TrainingArguments, Trainer
from peft import get_peft_model, LoraConfig, TaskType
from datasets import load_dataset

# Load base model
model_name = "meta-llama/Llama-3.1-8B"
model = AutoModelForCausalLM.from_pretrained(model_name, torch_dtype="auto", device_map="auto")
tokenizer = AutoTokenizer.from_pretrained(model_name)
tokenizer.pad_token = tokenizer.eos_token

# LoRA configuration
lora_config = LoraConfig(
    task_type=TaskType.CAUSAL_LM,
    r=16,                          # Rank (8-64, higher = more capacity)
    lora_alpha=32,                 # Scaling factor (typically 2*r)
    lora_dropout=0.05,             # Dropout for regularization
    target_modules=["q_proj", "v_proj", "k_proj", "o_proj"],  # Attention layers
    bias="none"                    # Don't train biases
)

# Apply LoRA
model = get_peft_model(model, lora_config)
model.print_trainable_parameters()
# Output: trainable params: 13,631,488 || all params: 8,043,307,008 || trainable%: 0.17%

# Prepare dataset
dataset = load_dataset("databricks/databricks-dolly-15k", split="train")

def tokenize(example):
    text = f"### Instruction:\n{example['instruction']}\n\n### Response:\n{example['response']}"
    return tokenizer(text, truncation=True, max_length=512, padding="max_length")

tokenized = dataset.map(tokenize, remove_columns=dataset.column_names)

# Training
training_args = TrainingArguments(
    output_dir="./lora-llama",
    num_train_epochs=3,
    per_device_train_batch_size=4,
    gradient_accumulation_steps=4,
    learning_rate=2e-4,
    fp16=True,
    logging_steps=10,
    save_strategy="epoch"
)

trainer = Trainer(
    model=model,
    args=training_args,
    train_dataset=tokenized,
    data_collator=lambda data: {"input_ids": torch.stack([f["input_ids"] for f in data]),
                                 "attention_mask": torch.stack([f["attention_mask"] for f in data]),
                                 "labels": torch.stack([f["input_ids"] for f in data])}
)

trainer.train()

# Save adapter only (6MB vs 16GB)
model.save_pretrained("./lora-llama-adapter")

QLoRA fine-tuning (memory-efficient)

from transformers import AutoModelForCausalLM, BitsAndBytesConfig
from peft import get_peft_model, LoraConfig, prepare_model_for_kbit_training

# 4-bit quantization config
bnb_config = BitsAndBytesConfig(
    load_in_4bit=True,
    bnb_4bit_quant_type="nf4",           # NormalFloat4 (best for LLMs)
    bnb_4bit_compute_dtype="bfloat16",   # Compute in bf16
    bnb_4bit_use_double_quant=True       # Nested quantization
)

# Load quantized model
model = AutoModelForCausalLM.from_pretrained(
    "meta-llama/Llama-3.1-70B",
    quantization_config=bnb_config,
    device_map="auto"
)

# Prepare for training (enables gradient checkpointing)
model = prepare_model_for_kbit_training(model)

# LoRA config for QLoRA
lora_config = LoraConfig(
    r=64,                              # Higher rank for 70B
    lora_alpha=128,
    lora_dropout=0.1,
    target_modules=["q_proj", "v_proj", "k_proj", "o_proj", "gate_proj", "up_proj", "down_proj"],
    bias="none",
    task_type="CAUSAL_LM"
)

model = get_peft_model(model, lora_config)
# 70B model now fits on single 24GB GPU!

LoRA parameter selection

Rank (r) - capacity vs efficiency

| Rank | Trainable Params | Memory | Quality | Use Case |

|------|-----------------|--------|---------|----------|

| 4 | ~3M | Minimal | Lower | Simple tasks, prototyping |

| 8 | ~7M | Low | Good | Recommended starting point |

| 16 | ~14M | Medium | Better | General fine-tuning |

| 32 | ~27M | Higher | High | Complex tasks |

| 64 | ~54M | High | Highest | Domain adaptation, 70B models |

Alpha (lora_alpha) - scaling factor

# Rule of thumb: alpha = 2 * rank
LoraConfig(r=16, lora_alpha=32)  # Standard
LoraConfig(r=16, lora_alpha=16)  # Conservative (lower learning rate effect)
LoraConfig(r=16, lora_alpha=64)  # Aggressive (higher learning rate effect)

Target modules by architecture

# Llama / Mistral / Qwen
target_modules = ["q_proj", "v_proj", "k_proj", "o_proj", "gate_proj", "up_proj", "down_proj"]

# GPT-2 / GPT-Neo
target_modules = ["c_attn", "c_proj", "c_fc"]

# Falcon
target_modules = ["query_key_value", "dense", "dense_h_to_4h", "dense_4h_to_h"]

# BLOOM
target_modules = ["query_key_value", "dense", "dense_h_to_4h", "dense_4h_to_h"]

# Auto-detect all linear layers
target_modules = "all-linear"  # PEFT 0.6.0+

Loading and merging adapters

Load trained adapter

from peft import PeftModel, AutoPeftModelForCausalLM
from transformers import AutoModelForCausalLM

# Option 1: Load with PeftModel
base_model = AutoModelForCausalLM.from_pretrained("meta-llama/Llama-3.1-8B")
model = PeftModel.from_pretrained(base_model, "./lora-llama-adapter")

# Option 2: Load directly (recommended)
model = AutoPeftModelForCausalLM.from_pretrained(
    "./lora-llama-adapter",
    device_map="auto"
)

Merge adapter into base model

# Merge for deployment (no adapter overhead)
merged_model = model.merge_and_unload()

# Save merged model
merged_model.save_pretrained("./llama-merged")
tokenizer.save_pretrained("./llama-merged")

# Push to Hub
merged_model.push_to_hub("username/llama-finetuned")

Multi-adapter serving

from peft import PeftModel

# Load base with first adapter
model = AutoPeftModelForCausalLM.from_pretrained("./adapter-task1")

# Load additional adapters
model.load_adapter("./adapter-task2", adapter_name="task2")
model.load_adapter("./adapter-task3", adapter_name="task3")

# Switch between adapters at runtime
model.set_adapter("task1")  # Use task1 adapter
output1 = model.generate(**inputs)

model.set_adapter("task2")  # Switch to task2
output2 = model.generate(**inputs)

# Disable adapters (use base model)
with model.disable_adapter():
    base_output = model.generate(**inputs)

PEFT methods comparison

| Method | Trainable % | Memory | Speed | Best For |

|--------|------------|--------|-------|----------|

| LoRA | 0.1-1% | Low | Fast | General fine-tuning |

| QLoRA | 0.1-1% | Very Low | Medium | Memory-constrained |

| AdaLoRA | 0.1-1% | Low | Medium | Automatic rank selection |

| IA3 | 0.01% | Minimal | Fastest | Few-shot adaptation |

| Prefix Tuning | 0.1% | Low | Medium | Generation control |

| Prompt Tuning | 0.001% | Minimal | Fast | Simple task adaptation |

| P-Tuning v2 | 0.1% | Low | Medium | NLU tasks |

IA3 (minimal parameters)

from peft import IA3Config

ia3_config = IA3Config(
    target_modules=["q_proj", "v_proj", "k_proj", "down_proj"],
    feedforward_modules=["down_proj"]
)
model = get_peft_model(model, ia3_config)
# Trains only 0.01% of parameters!

Prefix Tuning

from peft import PrefixTuningConfig

prefix_config = PrefixTuningConfig(
    task_type="CAUSAL_LM",
    num_virtual_tokens=20,      # Prepended tokens
    prefix_projection=True       # Use MLP projection
)
model = get_peft_model(model, prefix_config)

Integration patterns

With TRL (SFTTrainer)

from trl import SFTTrainer, SFTConfig
from peft import LoraConfig

lora_config = LoraConfig(r=16, lora_alpha=32, target_modules="all-linear")

trainer = SFTTrainer(
    model=model,
    args=SFTConfig(output_dir="./output", max_seq_length=512),
    train_dataset=dataset,
    peft_config=lora_config,  # Pass LoRA config directly
)
trainer.train()

With Axolotl (YAML config)

# axolotl config.yaml
adapter: lora
lora_r: 16
lora_alpha: 32
lora_dropout: 0.05
lora_target_modules:
  - q_proj
  - v_proj
  - k_proj
  - o_proj
lora_target_linear: true  # Target all linear layers

With vLLM (inference)

from vllm import LLM
from vllm.lora.request import LoRARequest

# Load base model with LoRA support
llm = LLM(model="meta-llama/Llama-3.1-8B", enable_lora=True)

# Serve with adapter
outputs = llm.generate(
    prompts,
    lora_request=LoRARequest("adapter1", 1, "./lora-adapter")
)

Performance benchmarks

Memory usage (Llama 3.1 8B)

| Method | GPU Memory | Trainable Params |

|--------|-----------|------------------|

| Full fine-tuning | 60+ GB | 8B (100%) |

| LoRA r=16 | 18 GB | 14M (0.17%) |

| QLoRA r=16 | 6 GB | 14M (0.17%) |

| IA3 | 16 GB | 800K (0.01%) |

Training speed (A100 80GB)

| Method | Tokens/sec | vs Full FT |

|--------|-----------|------------|

| Full FT | 2,500 | 1x |

| LoRA | 3,200 | 1.3x |

| QLoRA | 2,100 | 0.84x |

Quality (MMLU benchmark)

| Model | Full FT | LoRA | QLoRA |

|-------|---------|------|-------|

| Llama 2-7B | 45.3 | 44.8 | 44.1 |

| Llama 2-13B | 54.8 | 54.2 | 53.5 |

Common issues

CUDA OOM during training

# Solution 1: Enable gradient checkpointing
model.gradient_checkpointing_enable()

# Solution 2: Reduce batch size + increase accumulation
TrainingArguments(
    per_device_train_batch_size=1,
    gradient_accumulation_steps=16
)

# Solution 3: Use QLoRA
from transformers import BitsAndBytesConfig
bnb_config = BitsAndBytesConfig(load_in_4bit=True, bnb_4bit_quant_type="nf4")

Adapter not applying

# Verify adapter is active
print(model.active_adapters)  # Should show adapter name

# Check trainable parameters
model.print_trainable_parameters()

# Ensure model in training mode
model.train()

Quality degradation

# Increase rank
LoraConfig(r=32, lora_alpha=64)

# Target more modules
target_modules = "all-linear"

# Use more training data and epochs
TrainingArguments(num_train_epochs=5)

# Lower learning rate
TrainingArguments(learning_rate=1e-4)

Best practices

  • Start with r=8-16, increase if quality insufficient
  • Use alpha = 2 * rank as starting point
  • Target attention + MLP layers for best quality/efficiency
  • Enable gradient checkpointing for memory savings
  • Save adapters frequently (small files, easy rollback)
  • Evaluate on held-out data before merging
  • Use QLoRA for 70B+ models on consumer hardware

References

  • Advanced Usage - DoRA, LoftQ, rank stabilization, custom modules
  • Troubleshooting - Common errors, debugging, optimization

Resources

  • GitHub: https://github.com/huggingface/peft
  • Docs: https://huggingface.co/docs/peft
  • LoRA Paper: arXiv:2106.09685
  • QLoRA Paper: arXiv:2305.14314
  • Models: https://huggingface.co/models?library=peft

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