Keep pnpm current: preflight the published package and pnpm/action-setup self-installer, update pnpm locally, align packageManager in package.json, and refresh CI pins. Use this when refreshing the pnpm toolchain manually or in automation.
npx skills add https://github.com/openai/openai-agents-js --skill pnpm-upgrade
Use these steps to update pnpm and CI pins without blunt search/replace.
PNPM_VERSION=$(curl -fsSL https://registry.npmjs.org/pnpm/latest | jq -r .version).curl -fsSL "https://registry.npmjs.org/pnpm/${PNPM_VERSION}" | jq -r .dist.integrity.PNPM_INTEGRITY.sha512-.sha512- to lowercase hex, for example: printf '%s' "${PNPM_INTEGRITY#sha512-}" | base64 -d | xxd -p -c 256
PNPM_SHA512_HEX.curl -fsSL https://api.github.com/repos/pnpm/action-setup/releases/latest | jq -r .tag_name.GITHUB_TOKEN/GH_TOKEN if available for higher rate limits.ACTION_TAG (e.g., v4.2.0). Abort if missing.git ls-remote https://github.com/pnpm/action-setup "refs/tags/${ACTION_TAG}^{}" and capture the SHA as ACTION_SHA.git ls-remote https://github.com/pnpm/action-setup "refs/tags/${ACTION_TAG}".ACTION_SHA is empty.node .agents/skills/pnpm-upgrade/scripts/preflight.mjs --version "${PNPM_VERSION}" --action-ref "${ACTION_SHA}".dependencies or devDependencies. pnpm bundles its runtime dependencies, so these fields indicate a broken publication such as [email protected].pnpm/action-setup installation paths in separate temporary directories: install the regular pnpm bootstrap from pnpm-lock.json and the standalone @pnpm/exe bootstrap from exe-lock.json, set isolated PNPM_HOME directories, and self-update each bootstrap to PNPM_VERSION.pnpm self-update "${PNPM_VERSION}".corepack prepare "pnpm@${PNPM_VERSION}" --activate. Do not use this fallback to bypass a failed preflight.pnpm -v exactly matches PNPM_VERSION.package.json and set packageManager to pnpm@${PNPM_VERSION}+sha512.${PNPM_SHA512_HEX} (preserve trailing newline and formatting)..github/workflows/ that uses pnpm/action-setup.uses: pnpm/action-setup@${ACTION_SHA}.with: version: field exists, set it to ${PNPM_VERSION} (keep quoting style/indent).pnpm -v and confirm it matches the version portion of packageManager.packageManager keeps the exact +sha512.${PNPM_SHA512_HEX} suffix.git diff to ensure only intended workflow/package.json changes.$code-change-verification; otherwise, a light check is enough.chore: upgrade pnpm toolchain and open a PR (automation may do this).curl, jq, base64, xxd, node, npm, and pnpm/corepack. Install if missing.Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
Take openai/pnpm-upgrade from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.