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Ncbi Pmc Skill for Codex

Submit compact NCBI PMC Open Access requests for article/file availability metadata. Use when a user wants concise PMC Open Access summaries; save raw XML only on request.

3k tokens
context cost
the whole folder, loaded on every use
3
files
ships runnable scripts
0
copies elsewhere
how many repositories repackaged it
4915
stars on the repo
on the repository, not the skill itself

Install

one command, takes just this skill from the repository
npx skills add https://github.com/openai/plugins --skill ncbi-pmc-skill

What comes with it

8 848 bytes besides the instruction
agents/openai.yaml
scripts/ncbi_pmc.py

The instruction itself

6 sections, as written by the author

Operating rules

  • Use scripts/ncbi_pmc.py for all PMC Open Access calls in this package.
  • This skill is intentionally narrow: it currently covers the PMC Open Access service rather than the full PMC API surface.
  • Pass endpoint-specific query parameters under params, typically id for a PMCID or DOI-style lookup supported by the OA service.
  • Re-run requests in long conversations instead of relying on older tool output.
  • Treat displayed ... in tool previews as UI truncation, not literal request content.

Execution behavior

  • Return concise markdown summaries from the script output by default.
  • Return raw XML only if the user explicitly asks for machine-readable output.
  • Prefer targeted endpoint calls instead of broad unfiltered dumps.
  • If the user needs the full raw response, set save_raw=true and report the saved file path.

Input

  • Read one JSON object from stdin.
  • Optional fields: params, record_path, max_items, max_depth, timeout_sec, save_raw, raw_output_path
  • Common PMC Open Access patterns:
  • {"params":{"id":"PMC3257301"},"max_items":10}
  • {"params":{"id":"10.1093/nar/gkr1184"},"max_items":10}

Output

  • Success returns ok, source, and a compact summary.
  • Use raw_output_path when save_raw=true.
  • Failure returns ok=false with error.code and error.message.

Execution

echo '{"params":{"id":"PMC3257301"},"max_items":10}' | python scripts/ncbi_pmc.py

References

  • No additional runtime references are required; keep the import package limited to this file and scripts/ncbi_pmc.py.

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How to use it

Copy the folder

Take openai/ncbi-pmc-skill from the repository into ~/.claude/skills for personal use, or into .claude/skills inside a project.

Check the name does not clash

The agent identifies a skill by the name field in its header. Two skills with the same name cannot sit side by side — one of them will be ignored.