Closed-loop toolkit self-improvement: discover gaps, diagnose, propose, critique, build, test, evolve.
npx skills add https://github.com/notque/vexjoy-agent --skill toolkit-evolution
Schedulable (nightly) or manually-invoked 7-phase pipeline for continuous toolkit self-improvement. Discovers gaps, diagnoses problems from evidence, proposes solutions, critiques via multi-persona review, builds winners on isolated branches, A/B tests, and promotes via PR.
Nightly sibling of auto-dream (2:07 AM consolidates memories; 3:07 AM this skill diagnoses and builds). They feed each other: dream's graduated learnings inform evolution's diagnosis; evolution's results become dream's next input.
Invoke: /evolve, /evolve routing, /evolve hooks, /evolve --discover. Cron setup in references/evolve-preferred-patterns.md § Scheduling.
| Signal | Load These Files | Why |
|---|---|---|
| running DISCOVER/DIAGNOSE commands: learning DB queries, git scan, drift checks | diagnose-scripts.md | Loads detailed guidance from diagnose-scripts.md. |
| mining merged-PR history and review comments (Phase 0 Step 2b) | diagnose-scripts.md | Read-only gh pr list/gh pr view --comments commands, § DISCOVER Step 2b |
| writing the evolution cycle report | evolution-report-template.md | Loads detailed guidance from evolution-report-template.md. |
| Phase 3 CRITIQUE fallback; failure modes, error handling, cost estimates, cron setup | evolve-preferred-patterns.md | Loads detailed guidance from evolve-preferred-patterns.md. |
| Phase 6 EVOLVE: PR creation, merge, branch cleanup, learning records | evolve-scripts.md | Loads detailed guidance from evolve-scripts.md. |
Goal: Identify skills, agents, or capability categories the toolkit should have but doesn't. While later phases improve existing components, this phase finds entirely new capabilities the toolkit is missing.
Frequency: Monthly, not every run. The DISCOVER phase only executes if:
--discover flag is passed explicitly, ORCheck the last discovery run date using the frequency check command from references/diagnose-scripts.md § Discovery Frequency Check.
If neither condition is met, skip directly to Phase 1.
Step 1: Gather briefing data
Collect current toolkit state using the briefing data commands from references/diagnose-scripts.md § DISCOVER Step 1. Brief all 5 perspective agents with the same baseline.
Step 2: Dispatch 5 perspective agents in parallel
See references/evolve-preferred-patterns.md § Phase 0 DISCOVER for the full agent table and proposal format. Dispatch all 5 simultaneously.
Step 2b: Mine merged-PR history
Read-only gh queries over the last 30 merged PRs plus their review-comment threads surface recurring friction, repeated fix patterns, and skill/agent gaps that perspective agents miss because they read current state, not history. Commands and interpretation guide: references/diagnose-scripts.md § DISCOVER Step 2b. Tag every surviving proposal [PR-HISTORY].
Step 3: Deduplicate and filter -- remove duplicates of existing skills (check skills/INDEX.json), remove proposals with no evidence (require at least one concrete data point), group similar proposals and note convergent evidence.
Step 4: Feed into DIAGNOSE -- append surviving proposals to the Phase 1 opportunity list with source tagged [DISCOVER] (perspective agents) or [PR-HISTORY] (PR mining).
Step 5: Save discovery report to evolution-reports/discovery-{YYYY-MM-DD}.md (run mkdir -p evolution-reports first). Include briefing data, all proposals, filtering rationale, forwarded proposals, and date stamp.
Gate: Discovery report saved. Proposals forwarded to Phase 1. Proceed to DIAGNOSE.
Goal: Identify 5-10 evidence-backed improvement opportunities from multiple data sources.
Step 1: Query the learning database for recent failures and routing mismatches
Run the 4 search queries from references/diagnose-scripts.md § DIAGNOSE Step 1.
Look for: routing decision patterns, recurring routing failures and mismatches, skills that consistently underperform, error patterns without automated fixes.
Step 2: Scan recent git history for patterns
Run the git history commands from references/diagnose-scripts.md § DIAGNOSE Step 2.
Step 3: Check auto-dream reports for accumulated insights
Run the dream report check from references/diagnose-scripts.md § DIAGNOSE Step 3, then read the most recent dream-analysis file.
Step 3b: Cross-validate dream insights against current state
Before treating any dream insight as a proposal signal, verify it still reflects the current repo. Use the cross-validation commands from references/diagnose-scripts.md § DIAGNOSE Step 3b.
Mark an insight as STALE if: (a) it names a file that no longer exists, OR (b) it claims recent activity but git log shows nothing in the past 7 days.
Step 4: Check routing-table drift
Skills present in skills/INDEX.json but absent from the routing manifest represent a documentation gap. Run the routing-drift check from references/diagnose-scripts.md § DIAGNOSE Step 4.
Step 4b: Check for orphaned ADR session files
Run the orphaned session check from references/diagnose-scripts.md § DIAGNOSE Step 4b. Flag any found -- do not remove automatically.
Step 4c: Scan for registered stub hooks
Run the stub hook audit from references/diagnose-scripts.md § DIAGNOSE Step 4c. Flag any stub hook as a cleanup opportunity.
Step 4d: Check usage and governance signals
Run the usage and governance commands from references/diagnose-scripts.md § DIAGNOSE Step 4d. Feed dormant skills/agents into gap discovery (tag [USAGE]) and cluster unresolved governance events into the "what's failing" diagnosis (tag [GOVERNANCE]).
Step 4e: Run the skill sprawl audit
python3 scripts/skill-sprawl-audit.py
Reads skills/INDEX.json and reports prompt-budget cost, over-long descriptions, and near-duplicate skill bodies. Suggest-first: it never edits. Feed over-budget, over-long, and duplicate findings into the opportunity list (tag [SPRAWL]).
Step 5: Dedup against prior proposals
Load references/evolution-history.md. Check each opportunity against: (a) Rejected Proposals -- do not re-propose unless the reopen condition is met, (b) Shelved Proposals -- re-propose only if the reactivation condition is now satisfied, (c) Distilled Lessons -- apply the learned criteria to filter weak proposals early.
Step 6: Narrow by focus area (if provided)
If the user specified a focus area (e.g., "routing", "hooks", "agents"), filter all findings to that domain.
Step 7: Compile opportunity list
Output a numbered list of 5-10 improvement opportunities. Each entry must include:
Gate: At least 3 evidence-backed opportunities identified. If fewer than 3, expand the time window or broaden the data sources. Do not proceed with speculative opportunities that lack evidence.
Goal: Transform opportunities into actionable proposals with clear scope.
Step 1: Generate proposals
For each opportunity from Phase 1, propose 1-2 concrete solutions. Each proposal must be actionable:
Step 2: Estimate effort
| Effort | Definition |
|--------|-----------|
| Small | Single file edit, <30 lines changed |
| Medium | 2-5 files, new reference or script, <200 lines |
| Large | New skill or agent, multiple components, >200 lines |
Step 3: Check for duplicates
cat skills/INDEX.json | python3 -c "import sys,json; idx=json.load(sys.stdin); [print(k,'-',v.get('description','')) for k,v in idx.get('skills',{}).items()]" 2>/dev/null || echo "INDEX.json parse failed -- check manually"
Drop any proposal that duplicates an existing skill or capability.
Step 4: Rank proposals
Rank by: (Impact score) x (1 / Effort score), where High=3, Medium=2, Low=1 and Small=1, Medium=2, Large=3.
Output: ranked list of 5-10 proposals, each with proposal description, scope, effort, and expected outcome.
Gate: All proposals are concrete (specific files/skills named), non-duplicative (verified against INDEX.json), and ranked. Proceed with the top 5.
Goal: Evaluate proposals from multiple perspectives to surface blind spots.
Step 1: Check for multi-persona-critique skill
test -f skills/research/multi-persona-critique/SKILL.md && echo "AVAILABLE" || echo "NOT AVAILABLE"
Step 2a: If multi-persona-critique is available
Skill(skill="multi-persona-critique", args="Evaluate these toolkit improvement proposals: {proposals}")
Step 2b: If NOT available -- use inline fallback
See references/evolve-preferred-patterns.md § Phase 3 Inline Critique Fallback for the 3-agent dispatch prompts and scoring table.
Step 3: Synthesize consensus
For each proposal, average persona scores (STRONG=3, MODERATE=2, WEAK=1):
Gate: All personas have reported. Synthesis complete. At least 1 proposal rated STRONG. If no STRONG proposals, revisit Phase 2 with the critique feedback, or report to user that no high-confidence improvements were found this cycle.
On early exit (no STRONG proposals): always record to the learning DB before stopping. See references/evolve-scripts.md § Early Exit Record for the learning-db command template.
Goal: Implement the top 1-3 STRONG-rated proposals on isolated feature branches.
Constraint: Maximum 3 implementations per cycle. Focus over breadth.
Step 1: Select winners
Take the top 1-3 proposals rated STRONG by consensus. Do not pad with MODERATE proposals.
Step 2: Dispatch implementation agents
For each winner, dispatch an implementation agent in an isolated context. See references/evolve-scripts.md § Build Dispatch for the proposal-type to implementation-approach table.
Each implementation must create a feature branch feat/evolve-{proposal-slug} and commit with a descriptive message.
Step 3: Validate -- run python3 -m scripts.skill_eval.quick_validate skills/{skill-name}, python3 -m py_compile {script}, and bash -n {script} on each implementation.
Gate: All implementations committed on feature branches. Basic validation passed. Proceed to testing.
Goal: Empirically verify that each implementation improves outcomes vs baseline.
Step 1: Create test cases
For each implementation, create 3-5 realistic test prompts that exercise the changed behavior.
Step 2: Run comparisons
See references/evolve-scripts.md § Validate Run for the skill-eval command and manual fallback pattern.
Step 3: Evaluate results
Win condition for each implementation:
Gate: All implementations tested. Win/loss determined for each. Evidence recorded.
Goal: Ship winners via PR, record all outcomes in the learning database.
Step 1: Handle winners (WIN status)
For each winning implementation, create a PR using the template from references/evolve-scripts.md § Step 1, then merge. After creating the PR, run pr-review to validate, then merge.
The multi-persona critique + A/B testing gate is the review. Auto-merge is safe because the validation happened before this step.
Step 1b: Clean up the feature branch after merge
Use the cleanup commands from references/evolve-scripts.md § Step 1b.
Step 2: Handle losers (LOSS status)
Record what was tried and why it failed using the failure template from references/evolve-scripts.md § Step 2.
Step 3: Record the full cycle
Record using the full cycle template from references/evolve-scripts.md § Step 3.
Step 4: Write evolution report
Write the dated report to evolution-reports/evolution-report-{YYYY-MM-DD}.md using the template in references/evolution-report-template.md. See setup command in references/evolve-scripts.md § Step 4.
Gate: Winners merged. Learnings recorded for all proposals (wins and losses). Evolution report written. Cycle complete.
| Signal | Load |
|--------|------|
| Running Phase 0 DISCOVER (frequency check, briefing data commands needed) | references/diagnose-scripts.md |
| Running Phase 1 DIAGNOSE (Steps 1-4c commands needed) | references/diagnose-scripts.md |
| Phase 0 perspective agent table, proposal format | references/evolve-preferred-patterns.md |
| Phase 3 inline critique fallback (multi-persona not available) | references/evolve-preferred-patterns.md |
| Failure modes, error handling, cost estimate, cron scheduling | references/evolve-preferred-patterns.md |
| Running Phase 6 EVOLVE (PR template, merge, cleanup, learning DB commands) | references/evolve-scripts.md |
| Writing or reading the evolution report | references/evolution-report-template.md |
| Running Phase 1 DIAGNOSE (dedup against prior proposals) or Phase 2 PROPOSE | references/evolution-history.md |
references/evolution-report-template.md -- Template for the evolution reportreferences/diagnose-scripts.md -- Phase 0 and Phase 1 bash/Python commandsreferences/evolve-scripts.md -- Phase 6 PR, merge, cleanup, and learning DB commandsreferences/evolve-preferred-patterns.md -- Failure modes, error handling, cost, critique fallback, schedulingreferences/evolution-history.md -- Graduated proposal ledger, shelved conditions, rejected proposals, cycle summariesskills/meta/auto-dream/SKILL.md -- Nightly sibling: memory consolidation and learning graduationskills/meta/skill-eval/SKILL.md -- Skill testing and benchmarkingskills/research/multi-persona-critique/SKILL.md -- Multi-persona evaluation (may not exist yet; inline fallback in references)skills/meta/skill-creator/SKILL.md -- Skill creation methodologyskills/meta/agent-comparison/SKILL.md -- A/B testing methodologyskills/infrastructure/headless-cron-creator/SKILL.md -- Cron job creation patternsIntegration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take notque/toolkit-evolution from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.