> Use when your system manages multiple concurrent instances or sessions that each need isolated storage directories, per-instance file locking, or a prepare-once/create-many session factory pattern.
npx skills add https://github.com/microsoft/amplifier-bundle-skills --skill instance-storage-patterns
Problem: You run multiple instances of something (task runners, user sessions, build jobs). Each needs isolated storage, lifecycle tracking, and its own subdirectory tree. You also have expensive initialization (loading bundles, connecting to APIs) that should happen once, not per instance.
Approach: A filesystem-backed instance store with per-instance directories, per-instance file locking, and a session factory that prepares once and creates many.
Pattern proven in production across multiple Python CLI tools and web services.
All data for a single instance lives under one directory. Example layout (adapt to your needs):
~/.my-tool/
instances/{instance_id}/
instance.json — lifecycle metadata (status, timestamps)
workspace/ — code, git repo, tests
logs/ — pipeline node logs, checkpoint.json
events/ — events.jsonl, state.json, input-requests/
sidecar-data/ — sidecar service data (databases, repos)
output/ — artifacts (branch_name.txt, pr_url.txt)
This is defined as:
def get_instance_dir(instance_id: str) -> Path:
d = get_data_root() / "instances" / instance_id
d.mkdir(parents=True, exist_ok=True)
return d
# Subdirectory names used by other modules:
WORKSPACE_DIR = "workspace"
LOGS_DIR = "logs"
EVENTS_DIR = "events"
The design choice of instance-rooted (not type-rooted) matters: you can ls, tar, or rm -rf one instance directory to inspect, archive, or delete everything about that instance. Compare to the alternative where workspace files live in workspaces/{id}/ and logs in logs/{id}/ — that's harder to reason about.
def get_data_root() -> Path:
env_dir = os.environ.get("MY_TOOL_DATA_DIR")
root = Path(env_dir) if env_dir else Path.home() / ".my-tool"
root.mkdir(parents=True, exist_ok=True)
return root
One env var redirects ALL instance data. This is critical for:
defaultdict(threading.Lock)The InstanceStore uses a per-instance lock to prevent concurrent writes to the same instance's JSON:
class InstanceStore:
def __init__(self, root: str | Path) -> None:
self._root = Path(root)
# Note: locks are never pruned — one Lock (~100 bytes) per instance_id seen.
self._locks: defaultdict[str, threading.Lock] = defaultdict(threading.Lock)
def create_instance(self, instance_id, name, params) -> dict:
with self._locks[instance_id]:
...
def update_instance(self, instance_id, **changes) -> dict | None:
with self._locks[instance_id]:
data = self._read_instance(instance_id)
...
Why defaultdict instead of a single global lock: a global lock would serialize ALL instance writes. Per-instance locks allow concurrent writes to different instances while serializing writes to the same instance.
tempfile.mkstemp + os.replaceEvery instance mutation is written atomically:
def _write_instance(self, instance_id, data):
path = self._instance_path(instance_id)
path.parent.mkdir(parents=True, exist_ok=True)
content = json.dumps(data, ensure_ascii=False, default=str)
fd, tmp_path = tempfile.mkstemp(dir=path.parent, suffix=".tmp")
try:
os.write(fd, content.encode("utf-8"))
os.close(fd)
Path(tmp_path).replace(path) # atomic
except BaseException:
with contextlib.suppress(OSError):
os.close(fd)
Path(tmp_path).unlink(missing_ok=True)
raise
Note BaseException (not Exception) in the except clause — this catches KeyboardInterrupt too, preventing orphaned temp files even during Ctrl+C.
If creating instances requires expensive setup (loading configs, preparing templates, compiling schemas), separate the one-time preparation from per-instance creation. Keep the prepared state as a singleton; create lightweight session objects on demand.
When your state has nested dicts or lists, always use factory functions that return fresh copies — never share mutable defaults.
def empty_instance() -> dict:
"""Each call returns an independent object — no shared mutables."""
return {"status": "pending", "created_at": None, "metadata": {}}
# storage.py — filesystem-backed instance store
from collections import defaultdict
import contextlib, json, os, tempfile, threading
from pathlib import Path
class InstanceStore:
def __init__(self, root: Path):
self._root = root
self._locks: defaultdict[str, threading.Lock] = defaultdict(threading.Lock)
def _path(self, instance_id: str) -> Path:
return self._root / "instances" / instance_id / "instance.json"
def _read(self, instance_id: str) -> dict | None:
path = self._path(instance_id)
if not path.exists():
return None
return json.loads(path.read_text())
def _write(self, instance_id: str, data: dict) -> None:
path = self._path(instance_id)
path.parent.mkdir(parents=True, exist_ok=True)
fd, tmp = tempfile.mkstemp(dir=path.parent, suffix=".tmp")
try:
os.write(fd, json.dumps(data, default=str).encode())
os.close(fd)
Path(tmp).replace(path)
except BaseException:
with contextlib.suppress(OSError):
os.close(fd)
Path(tmp).unlink(missing_ok=True)
raise
def create(self, instance_id: str, **kwargs) -> dict:
with self._locks[instance_id]:
from datetime import UTC, datetime
now = datetime.now(UTC).isoformat()
data = {"instance_id": instance_id, "status": "starting",
"created_at": now, "updated_at": now, **kwargs}
self._write(instance_id, data)
return data
def update(self, instance_id: str, **changes) -> dict | None:
with self._locks[instance_id]:
data = self._read(instance_id)
if data is None:
return None
data.update(changes)
from datetime import UTC, datetime
data["updated_at"] = datetime.now(UTC).isoformat()
self._write(instance_id, data)
return data
def list_all(self) -> list[dict]:
instances_dir = self._root / "instances"
if not instances_dir.exists():
return []
results = []
for d in instances_dir.iterdir():
if d.is_dir():
data = self._read(d.name)
if data:
results.append(data)
results.sort(key=lambda i: i.get("created_at", ""), reverse=True)
return results
def delete(self, instance_id: str) -> bool:
with self._locks[instance_id]:
path = self._root / "instances" / instance_id / "instance.json"
if not path.exists():
return False
import shutil
shutil.rmtree(self._root / "instances" / instance_id)
return True
workspaces/{id}, logs/{id}). This was refactored to instance-rooted because: (a) deleting an instance required knowing all the type directories, (b) inspecting an instance required looking in 5+ directories, (c) archiving required a multi-path tar command.defaultdict(threading.Lock) memory note. Locks are never pruned. Each Lock is ~100 bytes. For hundreds of instances this is negligible. For millions, you'd need an LRU eviction strategy.ensure_ascii=False in JSON dumps. Use ensure_ascii=False so that non-ASCII text (e.g., issue titles in languages other than English) is stored as-is rather than escaped to \uXXXX. This makes the JSON files human-readable and reduces file size.default=str as a JSON serialization escape hatch. Using json.dumps(data, default=str) ensures that datetime objects, Paths, and enums serialize without crashing. It's a pragmatic choice for internal storage — you're trading strict type safety for crash resilience.mkdir(parents=True, exist_ok=True) on every write. Both the store's _write and get_instance_dir create directories on every call. This seems wasteful but prevents a class of bugs where a directory was deleted between creation and use (e.g., during cleanup or testing). The exist_ok=True flag makes repeated calls cheap.Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
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Take microsoft/instance-storage-patterns from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
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