jinzhezenggroup/dpdata-driver
Use dpdata Python Driver plugins to label systems (energies/forces/virials) via System.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid). Use when working with dpdata Python API (not CLI) and you need driver-based energy/force prediction, plugin registration keys, or examples of using dpdata with ASE calculators or DeePMD models.
npx skills add https://github.com/jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver
Use dpdata “driver plugins” to label a dpdata.System (predict energies/forces/virials) and obtain a dpdata.LabeledSystem.
System into a LabeledSystem by computing:energies (required)forces (optional but common)virials (optional)In dpdata, this is exposed as:
System.predict(*args, driver="dp", **kwargs) -> LabeledSystemdriver can be:
"ase", "dp", "gaussian"Driver.get_driver("ase")(...)When unsure what drivers exist in *this* dpdata version/env, query them at runtime:
import dpdata
from dpdata.driver import Driver
print(sorted(Driver.get_drivers().keys()))
import dpdata ensures built-in plugins are loaded before listing registered drivers.
In the current repo state, keys include:
asedp / deepmd / deepmd-kitgaussiansqmhybrid(Exact set depends on dpdata version and installed extras.)
import dpdata
from dpdata.system import System
sys = System("input.xyz", fmt="xyz")
ls = sys.predict(driver="ase", calculator=...) # returns dpdata.LabeledSystem
assert "energies" in ls.data
# optional:
# assert "forces" in ls.data
# assert "virials" in ls.data
This is the easiest *fully runnable* example because it doesn’t require external QM software.
Dependencies (recommended): declare script dependencies with uv inline metadata, then run with uv run.
# /// script
# requires-python = ">=3.8"
# dependencies = [
# "dpdata",
# "numpy",
# "ase",
# ]
# ///
Script:
from pathlib import Path
import numpy as np
from ase.calculators.lj import LennardJones
from dpdata.system import System
# write a tiny molecule
Path("tmp.xyz").write_text("""2\n\nH 0 0 0\nH 0 0 0.74\n""")
sys = System("tmp.xyz", fmt="xyz")
ls = sys.predict(driver="ase", calculator=LennardJones())
print("energies", np.array(ls.data["energies"]))
print("forces shape", np.array(ls.data["forces"]).shape)
if "virials" in ls.data:
print("virials shape", np.array(ls.data["virials"]).shape)
else:
print("virials: <not provided by this driver/calculator>")
from ase.calculators.lj import LennardJones
from dpdata.driver import Driver
from dpdata.system import System
sys = System("tmp.xyz", fmt="xyz")
ase_driver = Driver.get_driver("ase")(calculator=LennardJones())
ls = sys.predict(driver=ase_driver)
Use driver="hybrid" to sum energies/forces/virials from multiple drivers.
The HybridDriver accepts drivers=[ ... ] where each item is either:
Driver instance{"type": "sqm", ...} (type is the driver key)Example (structure only; may require external executables):
from dpdata.driver import Driver
hyb = Driver.get_driver("hybrid")(
drivers=[
{"type": "sqm", "qm_theory": "DFTB3"},
{"type": "dp", "dp": "frozen_model.pb"},
]
)
# ls = sys.predict(driver=hyb)
dp requires deepmd-kit + a model filegaussian requires Gaussian and a valid executable (default g16)sqm requires AmberTools sqmTake jinzhezenggroup/dpdata-driver from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.