mcpbeat Sign in

Knowledge Graph Agent Skill

Three-Layer Memory System — automatic fact extraction, entity-based knowledge graph, and weekly synthesis. Manages life/areas/ entities with atomic facts and living summaries.

2k tokens
context cost
the whole folder, loaded on every use
2
files
instructions only
0
copies elsewhere
how many repositories repackaged it
239
stars on the repo
on the repository, not the skill itself

Install

one command, takes just this skill from the repository
npx skills add https://github.com/jdrhyne/agent-skills --skill knowledge-graph

The instruction itself

11 sections, as written by the author

Knowledge Graph Skill

Maintain a lightweight, append-only entity graph that compounds durable facts across sessions.

When to Use

  • Extract durable facts from recent work or conversation history
  • Rewrite entity summaries from active facts
  • Answer "what do we know about X?" without reopening large transcripts
  • Keep shared context for people, companies, and projects inside the workspace

Data Model

Store the graph under:

<workspace>/life/areas/
  people/<slug>/
  companies/<slug>/
  projects/<slug>/

Each entity folder should contain:

  • summary.md for the short, current snapshot
  • facts.jsonl for atomic, append-only facts

Use one JSON object per line:

{
  "id": "<slug>-NNN",
  "fact": "Plain-English fact",
  "category": "relationship|milestone|status|preference|context|decision",
  "ts": "YYYY-MM-DD",
  "source": "conversation|manual|inference",
  "status": "active|superseded",
  "supersedes": "<older-id>"
}

Fact Rules

  • Keep facts atomic. One durable fact per entry.
  • Append new facts instead of rewriting history.
  • When something changes, add a new fact and mark the old one as superseded.
  • Skip ephemera, greetings, speculation, and low-value chatter.
  • Check existing facts before adding duplicates.

Durable facts usually include:

  • role or relationship changes
  • key decisions
  • long-lived preferences
  • major project milestones
  • stable operating context

Workflows

Fact Extraction

  • Read the recent daily note and the recent conversation window.
  • Identify durable facts worth preserving.
  • Resolve entity type and slug.
  • Create the entity folder if it does not exist.
  • Append new facts to facts.jsonl.
  • Note extraction activity in the daily note if the workspace uses one.

Weekly Synthesis

  • List entities changed during the week.
  • Load active facts only.
  • Rewrite summary.md in 3 to 8 concise lines.
  • Ensure contradicted facts are marked superseded.
  • Record a short synthesis note in the daily log if applicable.

Entity Lookup

  • Read summary.md first.
  • Open facts.jsonl only if the summary is stale or the user asked for detail.
  • Fall back to broader memory search only when the entity is missing from the graph.

Low-Token Recall

Recall should be triggered, not automatic.

  • Recall when the user names a tracked person, company, or project.
  • Recall when the user explicitly asks to remember, recall, or summarize prior context.
  • Inject only the short summary by default.
  • Avoid loading raw facts unless the user asked for specifics or contradictions need resolution.

Setup

Create the core directories once:

mkdir -p life/areas/people life/areas/companies life/areas/projects

If multiple agents share one workspace, point them at the same life/ directory so they operate on the same entity store.

Safety Boundaries

  • Do not store sensitive secrets, credentials, or highly personal data unless the user explicitly asked for it.
  • Do not create entities or facts for casual chat that has no durable value.
  • Do not inject the graph into every conversation by default.
  • Do not delete historical facts; supersede them with a newer fact instead.

Other skills for the same job

different authors, same section of the catalogue
Protocolsio Integration
by christophacham
×4

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.

16k tokens
Tailored Resume Generator
by frostant
×4

Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances

3k tokens
Excalidraw Diagram Generator
by github
vendor ×3

Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.

36k tokens scripts
Expo Dev Client
by openai
vendor ×3

Build and distribute Expo development clients locally or via TestFlight

961 tokens
Executing Plans
by ZhanlinCui
×3

Use when you have a written implementation plan to execute in a separate session with review checkpoints

542 tokens
Anndata
by christophacham
×3

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

16k tokens
Benchling Integration
by christophacham
×3

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

14k tokens
Biopython
by christophacham
×3

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.

24k tokens

How to use it

Copy the folder

Take jdrhyne/knowledge-graph from the repository into ~/.claude/skills for personal use, or into .claude/skills inside a project.

Check the name does not clash

The agent identifies a skill by the name field in its header. Two skills with the same name cannot sit side by side — one of them will be ignored.