Use when you need to design or implement MongoDB data access in Spring Boot — including document modeling, Spring Data Mongo repositories/templates, indexing, optimistic concurrency, and error handling. This should trigger for requests such as Add MongoDB in Spring Boot; Review Spring Data Mongo design; Improve error handling for Mongo writes; Model MongoDB documents for a Spring Boot service; Configure Spring Data MongoDB indexes or transactions. Part of Plinth Toolkit
npx skills add https://github.com/jabrena/plinth --skill 315-frameworks-spring-mongodb
Apply Spring Data MongoDB guidance with concrete examples for design, implementation, and error handling.
Compile before MongoDB refactors; verify after changes.
./mvnw compile or mvn compile before applying any change./mvnw clean verify or mvn clean verify after applying improvementsRead references/315-frameworks-spring-mongodb.md and inspect persistence setup before proposing changes.
Identify data model, consistency, and query requirements to define safe improvements.
Implement/refactor mappings, repositories, indexes, and failure handling policies.
Execute build/tests and summarize what changed, what was verified, and follow-up actions.
For detailed guidance, examples, and constraints, see references/315-frameworks-spring-mongodb.md.
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
Take jabrena/315-frameworks-spring-mongodb from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.