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Manuscript As Code Agent Skill

Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.

679 tokens
context cost
the whole folder, loaded on every use
2
files
instructions only
0
copies elsewhere
how many repositories repackaged it
2583
stars on the repo
on the repository, not the skill itself

Install

one command, takes just this skill from the repository
npx skills add https://github.com/foryourhealth111-pixel/Vibe-Skills --skill manuscript-as-code

What comes with it

856 bytes besides the instruction
templates/repo-structure.md

The instruction itself

4 sections, as written by the author

Manuscript as Code(论文工程化)

目标

把“写论文”升级成“交付可复现的出版工程”:

  • 结构清晰:任何人进仓库都知道哪里改正文、哪里改图、哪里改引用
  • 可复现:一条命令能构建 PDF/HTML;CI 自动验证
  • 可审计:每张图/每个结果都有来源(代码/数据/参数)

适用:

  • 多人协作写作(导师/合作者/跨机构)
  • 反复投稿/返修(需要明确改动轨迹)
  • 图表多、实验多、容易“找不到版本”的项目

推荐仓库结构(最小可行)

templates/repo-structure.md。核心思想:

  • manuscript/:只放正文与引用(source-of-truth)
  • figures/:每张图一个目录(source + out)
  • build/:所有生成物(可删除,可再生)
  • submission/revision/:投稿与返修阶段产物

元规则(工程化的关键)

1) 生成物与源文件分离

  • 源:figures/fig-02/src/plot.py
  • 产物:figures/fig-02/out/fig-02.pdf
  • 禁止把产物当源文件编辑(比如在 PDF 上涂改)

2) 每张图都要能“重生成”

最少要求:

  • 一条命令 + 固定参数能导出最终图(PDF/TIFF)
  • 记录依赖版本与随机种子(如果有)

3) 把“投稿约束”写成配置

推荐维护:

  • submission/submission-manifest.yml(统一记录规格与完成度)

案例(推荐学习)

  • Manubot:manubot/rootstock(论文的 CI/协作写作范式)
  • Deep review:greenelab/deep-review(评审/返修视角)

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How to use it

Copy the folder

Take foryourhealth111-pixel/manuscript-as-code from the repository into ~/.claude/skills for personal use, or into .claude/skills inside a project.

Check the name does not clash

The agent identifies a skill by the name field in its header. Two skills with the same name cannot sit side by side — one of them will be ignored.