Sets up and manages ClickHouse using the clickhousectl CLI — installs and runs a local ClickHouse server for development, and creates managed ClickHouse Cloud services for production (authentication, service creation, schema migration, application connection). Use when the user wants to build an application with ClickHouse, set up a local ClickHouse dev environment, create tables and start querying, deploy ClickHouse to production or ClickHouse Cloud, or migrate from a local setup to the cloud.
npx skills add https://github.com/ClickHouse/agent-skills --skill infra-clickhouse
clickhousectl manages ClickHouse in two environments:
This file routes to the right reference. The step-by-step workflows live in ref/local.md and ref/cloud.md — read the one that matches the user's situation before running commands.
| The user wants to... | Read |
|----------------------|------|
| Build an app with ClickHouse, develop or prototype locally, no cloud account needed | ref/local.md |
| Go to production, host a managed ClickHouse, or use ClickHouse Cloud explicitly | ref/cloud.md |
| Operate an existing cloud service (schemas, users, queries against it) | ref/cloud.md |
| Develop locally now, ship to production later | Start with ref/local.md; it points to ref/cloud.md when it's time to go to prod |
If it's genuinely ambiguous (e.g. "set up ClickHouse for my app"), default to local for development tasks and ask before creating anything in the cloud — cloud services cost money.
Check that clickhousectl is installed:
which clickhousectl
If not found, install it:
curl -fsSL https://clickhouse.com/cli | sh
This installs to ~/.local/bin/clickhousectl (with a chctl alias). If the command is still not found, suggest export PATH="$HOME/.local/bin:$PATH" or a new terminal.
All commands accept --json for machine-readable output. Exit codes follow gh conventions: 0 success, 1 error, 2 cancelled, 4 auth required.
clickhouse-best-practices skill for ORDER BY selection, data types, and partitioning.infra-postgres skill.Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
Take clickhouse/infra-clickhouse from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.