Bioservices Agent Skill

Uniprot Database

by ComeOnOliver

×3

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.

Bullmq Specialist

by ComeOnOliver

×2

BullMQ expert for Redis-backed job queues, background processing, and reliable async execution in Node.js/TypeScript applications. Use when: bullmq, bull queue, redis queue, background job, job queue.

Moodle External API Development

by ComeOnOliver

×2

Create custom external web service APIs for Moodle LMS. Use when implementing web services for course management, user tracking, quiz operations, or custom plugin functionality. Covers parameter validation, database operations, error handling, service registration, and Moodle coding standards.

Geopandas

by ComeOnOliver

×2

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.

Gget

by ComeOnOliver

×2

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

Backend Patterns

by ComeOnOliver

×2

Backend architecture patterns, API design, database optimization, and server-side best practices for Node.js, Express, and Next.js API routes.

Using Neon

by ComeOnOliver

×2

Guides and best practices for working with Neon Serverless Postgres. Covers getting started, local development with Neon, choosing a connection method, Neon features, authentication (@neondatabase/auth), PostgREST-style data API (@neondatabase/neon-js), Neon CLI, and Neon's Platform API/SDKs. Use for any Neon-related questions.

Bioservices

by K-Dense-AI

×1

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.