Create reproducible development environments with Dev Containers, Nix flakes, and Devbox for consistent toolchains across teams. Use when onboarding developers, standardizing build environments, or eliminating "works on my machine" problems.
npx skills add https://github.com/BagelHole/DevOps-Security-Agent-Skills --skill devcontainers-nix
Reproducible, portable development environments that eliminate environment drift.
Use this skill when:
// .devcontainer/devcontainer.json
{
"name": "My Project",
"image": "mcr.microsoft.com/devcontainers/base:ubuntu-22.04",
"features": {
"ghcr.io/devcontainers/features/node:1": { "version": "20" },
"ghcr.io/devcontainers/features/python:1": { "version": "3.12" },
"ghcr.io/devcontainers/features/docker-in-docker:2": {},
"ghcr.io/devcontainers/features/kubectl-helm-minikube:1": {}
},
"forwardPorts": [3000, 5432],
"postCreateCommand": "npm install",
"customizations": {
"vscode": {
"extensions": [
"dbaeumer.vscode-eslint",
"esbenp.prettier-vscode",
"ms-python.python"
],
"settings": {
"editor.formatOnSave": true
}
}
}
}
// .devcontainer/devcontainer.json
{
"name": "Full Stack Dev",
"dockerComposeFile": "docker-compose.yml",
"service": "app",
"workspaceFolder": "/workspace",
"forwardPorts": [3000, 5432, 6379],
"postCreateCommand": "npm install && npx prisma migrate dev"
}
# .devcontainer/docker-compose.yml
services:
app:
build:
context: ..
dockerfile: .devcontainer/Dockerfile
volumes:
- ..:/workspace:cached
command: sleep infinity
depends_on: [db, redis]
db:
image: postgres:16
environment:
POSTGRES_DB: dev
POSTGRES_USER: dev
POSTGRES_PASSWORD: dev
volumes:
- pgdata:/var/lib/postgresql/data
ports:
- "5432:5432"
redis:
image: redis:7-alpine
ports:
- "6379:6379"
volumes:
pgdata:
# .devcontainer/Dockerfile
FROM mcr.microsoft.com/devcontainers/base:ubuntu-22.04
# System dependencies
RUN apt-get update && apt-get install -y \
build-essential \
curl \
git \
jq \
unzip \
&& rm -rf /var/lib/apt/lists/*
# Install project-specific tools
RUN curl -fsSL https://get.opentofu.org/install-opentofu.sh | sh -s -- --install-method standalone
RUN curl -LO "https://dl.k8s.io/release/$(curl -sL https://dl.k8s.io/release/stable.txt)/bin/linux/amd64/kubectl" \
&& install kubectl /usr/local/bin/
# Non-root user setup
USER vscode
WORKDIR /workspace
# flake.nix
{
description = "Project development environment";
inputs = {
nixpkgs.url = "github:NixOS/nixpkgs/nixos-unstable";
flake-utils.url = "github:numtide/flake-utils";
};
outputs = { self, nixpkgs, flake-utils }:
flake-utils.lib.eachDefaultSystem (system:
let
pkgs = nixpkgs.legacyPackages.${system};
in {
devShells.default = pkgs.mkShell {
buildInputs = with pkgs; [
# Languages
nodejs_20
python312
go_1_22
rustc
cargo
# Tools
docker-compose
kubectl
kubernetes-helm
opentofu
awscli2
jq
yq-go
# Databases
postgresql_16
redis
];
shellHook = ''
echo "Dev environment loaded"
export PROJECT_ROOT=$(pwd)
export PATH="$PROJECT_ROOT/node_modules/.bin:$PATH"
'';
};
}
);
}
# Enter the dev shell
nix develop
# Or run a single command
nix develop --command bash -c "node --version && go version"
# Build and run
nix build
nix run
# Lock flake inputs for reproducibility
nix flake lock
nix flake update # Update all inputs
# Update a specific input
nix flake lock --update-input nixpkgs
Devbox wraps Nix with a friendlier interface:
# Install Devbox
curl -fsSL https://get.jetify.com/devbox | bash
# Initialize project
devbox init
# Add packages
devbox add nodejs@20 [email protected] postgresql@16
devbox add [email protected] kubectl helm
# Enter shell
devbox shell
# Run commands without entering shell
devbox run node --version
{
"$schema": "https://raw.githubusercontent.com/jetify-com/devbox/main/.schema/devbox.schema.json",
"packages": [
"nodejs@20",
"[email protected]",
"[email protected]",
"[email protected]",
"[email protected]",
"[email protected]",
"[email protected]",
"[email protected]",
"postgresql@16",
"redis@7"
],
"env": {
"PROJECT_ROOT": "$PWD",
"DATABASE_URL": "postgresql://localhost:5432/dev"
},
"shell": {
"init_hook": [
"echo 'Dev environment ready'",
"npm install --silent 2>/dev/null || true"
],
"scripts": {
"dev": "npm run dev",
"test": "npm test",
"db:start": "pg_ctl -D .devbox/virtenv/postgresql/data start",
"db:stop": "pg_ctl -D .devbox/virtenv/postgresql/data stop",
"db:migrate": "npx prisma migrate dev"
}
}
}
# Run project scripts
devbox run dev
devbox run test
devbox run db:start
# Generate direnv integration (auto-activate on cd)
devbox generate direnv
# Generate Dockerfile from devbox config
devbox generate dockerfile
# Install direnv
devbox add direnv
# Generate .envrc
devbox generate direnv
# Allow direnv
direnv allow
# .envrc (auto-generated)
eval "$(devbox generate direnv --print-envrc)"
Now cd-ing into the project automatically loads the environment.
# .github/workflows/ci.yml
name: CI
on: [push, pull_request]
jobs:
test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: jetify-com/[email protected]
with:
enable-cache: true
- run: devbox run test
- run: devbox run lint
name: CI
on: [push, pull_request]
jobs:
test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: cachix/install-nix-action@v26
with:
nix_path: nixpkgs=channel:nixos-unstable
- uses: cachix/cachix-action@v14
with:
name: my-project
authToken: '${{ secrets.CACHIX_AUTH_TOKEN }}'
- run: nix develop --command bash -c "npm ci && npm test"
// .devcontainer/devcontainer.json — works in Codespaces
{
"name": "Codespaces Dev",
"image": "mcr.microsoft.com/devcontainers/universal:2",
"features": {
"ghcr.io/devcontainers/features/node:1": { "version": "20" }
},
"postCreateCommand": "npm install",
"portsAttributes": {
"3000": { "label": "App", "onAutoForward": "openBrowser" },
"5432": { "label": "Postgres", "onAutoForward": "ignore" }
}
}
| Feature | Dev Containers | Nix Flakes | Devbox |
|---------|---------------|------------|--------|
| Learning curve | Low | High | Low |
| Reproducibility | Good (Docker) | Excellent | Excellent (Nix) |
| Speed | Slow (build image) | Fast (cached) | Fast (cached) |
| IDE support | VS Code, JetBrains | Any terminal | Any terminal |
| CI integration | Docker-based | Nix actions | Devbox action |
| Offline support | Limited | Full | Full |
| macOS/Linux/Win | All | macOS/Linux | macOS/Linux |
latestflake.lock, devbox.lock, etc.)devbox shell or nix develop| Issue | Solution |
|-------|---------|
| Nix build slow first time | Use binary cache (Cachix), nix develop caches after first run |
| Dev Container won't build | Check Docker disk space, rebuild with --no-cache |
| Package not in Nixpkgs | Search at search.nixos.org, or use fetchFromGitHub overlay |
| Devbox hash mismatch | Run devbox update, delete .devbox/ and re-init |
| direnv not activating | Run direnv allow, check shell hook is installed |
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take bagelhole/devcontainers-nix from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.
The instructions reference npm, npx, apt.
Without those the skill loads but fails at the first command.