Optional manual drift audit — report stale provenance-tracked docs (via _provenancelib drift detection across .codearbiter/.provenance/), then per stale doc offer re-scout / re-baseline / defer. Not the daily loop; commit-gate auto-heal owns routine maintenance.
npx skills add https://github.com/arbiterForge/codeArbiter --skill context-check
An optional, on-demand drift audit for bypass cases: a merge or an external
edit drifted a tracked source file you are not about to commit, so commit-gate's
Phase 5.5 auto-heal did not fire. This skill reports stale docs and lets you
act on each one individually.
This skill is NOT in the daily loop. Commit-gate auto-heal (Phase 5.5,
heal_worklist) owns the routine maintenance path. Invoke this only when drift
was introduced outside a commit (e.g. a direct push, a merge you did not
author, a manual file edit).
Read these before computing drift:
.codearbiter/.provenance/ — the per-doc provenance records. Load allrecords via load_provenance_dir from
${CLAUDE_PLUGIN_ROOT}/hooks/_provenancelib.py.
.codearbiter/code-map.md — coarse concern map; read to orient on whichmodules the stale docs govern.
Use _provenancelib helpers in this order:
load_provenance_dir(root + "/.codearbiter/.provenance/") — returns theprovenance map {doc: record}.
drift_trigger: true paths across all records.batch_hash(paths, runner) — hash every existing path in one git call.compute_drift(provenance_map, current_hashes) — returns a drift report{doc: [{path, kind}]} for docs that have stale sources.
Alternatively reuse the same logic as startup_drift_line by calling it for
a human-readable summary, then inspecting compute_drift directly for detail.
If the drift report is empty: report "no stale docs — provenance is fresh"
and exit. No further action required.
For each doc in the drift report, call changed_scope(doc_provenance, drift)
to list its drifted paths. Present a concise report before offering actions:
Stale docs (N):
<doc>: <path1>, <path2> (changed | missing)
...
For each stale doc, present three choices and wait for the user to select one:
re-scout — dispatch an incremental re-scout of the drifted paths for this
doc, scoped to those paths only (like commit-gate Phase 5.5 heal but manually
invoked). The scout re-reads the changed paths and reports whether claims still
hold. If claims still hold: silently re-baseline the hashes via rebaseline.
If claims changed: surface the proposed doc edits for the user to accept before
re-baselining.
re-baseline — acknowledge the drift without re-scouting: call
rebaseline(provenance, current_hashes) to update the stored hashes silently.
Use this when the source change is cosmetic (formatting, comments, whitespace)
and the derived doc claims are still accurate.
defer — do nothing for this doc now. The drift line will reappear at the
next SessionStart. Use when the change is in-progress and the doc update should
wait for a later commit.
After processing all stale docs, summarize which docs were re-scouted,
re-baselined, or deferred.
This skill MUST NOT commit. If re-scout or re-baseline produces updated
.codearbiter/.provenance/ records, those file changes ride the next
user-initiated commit through commit-gate normally. No staging, no commits here.
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take arbiterforge/codearbiter-context-check from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.