Sanctioned, logged bypass of a gate or hard rule — one audit line, then proceed.
npx skills add https://github.com/arbiterForge/codeArbiter --skill ca-override
The sanctioned escape hatch. Bypass is permitted only with an audit log entry. Overrides are always
logged, always visible, never silent. Single identity, single confirm.
$ARGUMENTS — the reason names the gate being bypassed and a justification. Reject avague reason ("just skip it") and ask for a specific one.
git config user.email only. If it is unset, ask the user onceto state their identity for the log. (No platform ladder, no second confirmation.)
<project-root>/.codearbiter/overrides.log: [ISO-8601 timestamp] | BY: <email> | GATE: <gate bypassed> | REASON: <reason>
The log is append-only — never edited or deleted, committed as a permanent audit artifact.
A routine gate (lint, a style rule, a non-security review finding) takes the single-confirm path above.
But a security-critical stop is NOT bypassable by a single confirm. The following require the
heavier path below, never the one-line flow:
Heavier path (all required, in order):
concrete risk. A generic "security override" is rejected.
their own words (a bare "yes"/"go ahead"/"I trust you" is declined — this mirrors decision-variance).
Detect identity from git config user.email; if unset, ask once.
SECURITY-OVERRIDE that records the specific finding,not just the gate name:
[ISO-8601] | BY: <email> | SECURITY-OVERRIDE | FINDING: <specific finding> | REASON: <reason>
python3 "<plugin-root>/hooks/security-pass.py" || python "<plugin-root>/hooks/security-pass.py",
which writes <project-root>/.codearbiter/.markers/security-gate-passed bound to the
sensitive lines it approves, so hook H-09b/H-10b allows the commit — recorded only after
steps 1–3, never to skip the gate proper.
Under /ca-sprint, a security-critical override is a hard-gate STOP: it surfaces to the user and is
never auto-decided, even in autonomous mode (SPRINT.md hard gates).
MUST write the log line before proceeding — it is not optional. MUST capture an operator identity —
"codeArbiter" or "automated" are not valid. MUST include a justification. The override is scoped to
the immediate action only; it creates no standing exception. MUST NOT edit or delete an existing
overrides.log entry. MUST route a security-critical / crypto-secret / irreversible stop through the
Security ceiling path — never the single-confirm flow — and MUST NOT auto-decide such an override
under /ca-sprint.
/ca-conflict.Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take arbiterforge/codearbiter-ca-override from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.