> Render academic Markdown documents (English or Korean) to publication-quality PDF via pandoc + xelatex. handouts, anchor docs (Q&A grids), and reference tables. Auto-infers pipe-table column widths from content (label column shrinks to fit, data columns share remaining width). CJK-aware font fallback for Korean text (Apple SD Gothic Neo on macOS, Noto Sans CJK KR on Linux). filling (/fill-protocol), figures (/make-figures).
npx skills add https://github.com/Aperivue/medsci-skills --skill render-pdf-doc
Markdown + frontmatter → publication-quality academic PDF (English or Korean).
In real circulation cycles for academic PDFs, two recurring failure patterns appear:
Manual fixes work but the same pattern recurs across proposals, briefings, IRB covers, exemption applications. This skill focuses on layout (CJK fonts + table column widths). Bibliography and CSL are handled by /manage-refs.
| Task | Skill |
|---|---|
| Manuscript + bibliography → DOCX/PDF | /manage-refs scripts/render_pandoc.sh (CSL + .bib) |
| Filling an institutional .docx form | /fill-protocol |
| ICMJE COI form | /fill-icmje-coi |
| Figure / PPTX | /make-figures, /present-paper |
| This skill: non-bib academic markdown → PDF (proposal, briefing, anchor doc, IRB cover) | /render-pdf-doc |
mainfont + CJKmainfont. The default fallback is OS-detected.redact_internal: true option.tbl-colwidths has reported PDF regressions (issues 6089/9200).# macOS
brew install pandoc
brew install --cask mactex-no-gui # xelatex + xeCJK (~5 GB)
# Linux
sudo apt-get install pandoc texlive-xetex texlive-lang-cjk fonts-noto-cjk
# Windows (PowerShell) — run in Git Bash afterwards
winget install --id JohnMacFarlane.Pandoc
winget install --id MiKTeX.MiKTeX # xelatex; installs missing LaTeX packages on demand
# No CJK font download needed: Malgun Gothic ships with Windows 7+ and is the default here.
Detection:
bash scripts/check_deps.sh
Windows / Git Bash note. MiKTeX's binary directory
(%LOCALAPPDATA%\Programs\MiKTeX\miktex\bin\x64) is often not on the Git Bash PATH,
so xelatex can read as [MISS] even after install. Both check_deps.sh and
render_pdf.sh now auto-probe that location; if xelatex still isn't found, add the
directory to your PATH (or run from the *MiKTeX Console → Settings*-configured shell).
The Windows CJK/main font default is Malgun Gothic (preinstalled); override per document
via frontmatter, or with --font / --cjk-font.
---
title: "Paper 2 Calibration Anchor — Q&A Grid"
author: "<Author Group>"
date: "2026-05-01"
mainfont: "Apple SD Gothic Neo" # macOS default
CJKmainfont: "Apple SD Gothic Neo"
geometry: "margin=0.85in"
fontsize: 11pt
linestretch: 1.25
colorlinks: true
---
For Linux/CI, use Noto Sans CJK KR; on Windows, use Malgun Gothic. The render script auto-detects the default per OS.
python scripts/infer_colwidths.py input.md > input.colwidths.md
The script:
max(len(header), max(len(cell))) (CJK = 2 cells, ASCII = 1).Override per-table via attribute: {tbl-colwidths="[20,40,40]"} after caption — passes through unchanged.
bash scripts/render_pdf.sh -i input.colwidths.md -o output.pdf
Or one-shot:
bash scripts/render_pdf.sh -i input.md -o output.pdf --infer-colwidths
xelatex silently drops any character the chosen font does not cover — the PDF
renders with the glyph simply missing, no error or warning. Academic markdown
routinely carries glyphs a default Latin font misses: transition arrows (→ ↑ ↓),
math operators (− ≤ ≥ ± √ ∪ × ≈ ≠), stats Greek (κ μ σ β), bullets/marks (• ★ ✓),
and CJK. Scan the source first so a silent drop is caught before it ships:
python3 scripts/scan_glyph_coverage.py input.md --strict
# real cmap check when you have the font file + fonttools:
python3 scripts/scan_glyph_coverage.py input.md --font "/path/to/body.otf" --strict
It groups the risky glyphs by class (advisory), or — with --font + fonttools
— reports which are genuinely absent from the font's cmap. If risky glyphs are
present, ensure mainfont/CJKmainfont cover them (a CJK-capable font such as
*Apple SD Gothic Neo* / *Noto Sans CJK* usually covers arrows + Hangul but can
still miss the true-minus − U+2212 and ★). **The DOCX is authoritative; the
PDF is a convenience copy** — never let a PDF render drop a glyph the document
needs.
Open the PDF. Check:
Starter markdown in templates/ (English default; a Korean variant *_ko.md ships alongside each):
anchor-doc.md — Q&A gridproposal-cover.md — research-proposal cover pagebriefing-handout.md — meeting brief (1-page)reference-table.md — comparison-table formatEach template marks slots with a <!-- TODO: --> marker.
| Anti-pattern | Consequence |
|---|---|
| Equal dash split (\|---\|---\|---\|) | A column with only a short label gets the same width → cramped data columns |
| CJKmainfont not set | Hangul falls back to Times New Roman (broken Latin glyphs or blanks) |
| Change history / version (e.g. v3.2.2) / PI attribution exposed in a circulation PDF | Confuses the first recipient; leaks internal information |
| Quarto tbl-colwidths for PDF | PDF regression in Quarto 1.4+ — trust HTML only |
scripts/render_pdf.sh — pandoc + xelatex wrapper, OS font detectionscripts/infer_colwidths.py — auto-generates pipe-table separator dash ratiosscripts/check_deps.sh — checks for pandoc / xelatex / CJK fonttemplates/ — 4 starters (English) + their *_ko.md Korean variantsreferences/pandoc_korean_cheatsheet.md — collection of frontmatter patterns (Korean-PDF reference)references/known_pitfalls.md — em-dash line breaks, smart quotes, etc. (Korean-PDF reference)retype a number from prose, and do not carry one forward from an earlier draft — a table that
was correct in v3 is not evidence it is correct in v4.
/manage-refs separately — this skill does not handle bib..docx or .eml aco-author sent) unmodified as its own artifact. The PDF is a derivative, not a replacement, and
the next round is diffed against that source. If the source was itself AI-drafted by a
collaborator, treat every number, denominator, and author-year in it as unverified: re-derive
each from the underlying paper or analysis output before it reaches the PDF.
Some passages in this skill cite a path of the form ~/.claude/rules/<name>.md. Those are the
maintainer's personal global rules, kept outside this repository. They are **not shipped with
this skill** and will not exist on your machine; they appear only as provenance for where a
convention came from. If one of them looks like it is standing in for an instruction you actually
need, that is a bug — please open an issue, because the instruction belongs here.
Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction. When Claude needs to work with professional documents (.docx files) for: (1) Creating new documents, (2) Modifying or editing content, (3) Working with tracked changes, (4) Adding comments, or any other document tasks
Comprehensive PDF manipulation toolkit for extracting text and tables, creating new PDFs, merging/splitting documents, and handling forms. When Claude needs to fill in a PDF form or programmatically process, generate, or analyze PDF documents at scale.
Presentation creation, editing, and analysis. When Claude needs to work with presentations (.pptx files) for: (1) Creating new presentations, (2) Modifying or editing content, (3) Working with layouts, (4) Adding comments or speaker notes, or any other presentation tasks
Create beautiful visual art in .png and .pdf documents using design philosophy. You should use this skill when the user asks to create a poster, piece of art, design, or other static piece. Create original visual designs, never copying existing artists' work to avoid copyright violations.
Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.
Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.
Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates, layouts, speaker notes, or comments. Trigger whenever the user mentions \"deck,\" \"slides,\" \"presentation,\" or references a .pptx filename, regardless of what they plan to do with the content afterward. If a .pptx file needs to be opened, created, or touched, use this skill.
Create and edit Obsidian Flavored Markdown with wikilinks, embeds, callouts, properties, and other Obsidian-specific syntax. Use when working with .md files in Obsidian, or when the user mentions wikilinks, callouts, frontmatter, tags, embeds, or Obsidian notes.
Take aperivue/render-pdf-doc from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.
The instructions reference brew, apt.
Without those the skill loads but fails at the first command.