Explainability Agent Skill

Explainability Skill

Purpose

A saliency / Grad-CAM heat-map is the most over-interpreted artifact in medical-imaging AI: a

colourful map over the lesion is routinely presented as proof the model "looks at the right thing."

Adebayo et al. (*NeurIPS* 2018) showed many saliency methods produce visually convincing maps that are

independent of the model's learned weights and of the labels — so they explain nothing. This skill

produces an explainability analysis that clears the rigor bar, and audits an existing one, so the map

is trustworthy before it reaches a manuscript (CLAIM 2024 / TRIPOD+AI interpretability items).

It sits alongside evaluation in the lane: /architecture-zoo → /preprocess-imaging →

/model-scaffold → /model-validation → /model-evaluation + explainability →

/write-paper + /check-reporting. It integrates captum / pytorch-grad-cam (referenced in the

plan); it does not reimplement them and never runs a model on real patient data.

When to use

• You produced (or are about to produce) saliency / Grad-CAM / attention maps and want them reported

to the standard a reviewer expects.

• You want to audit an explainability analysis for the four failure modes below.

When NOT to use

• Discrimination / calibration metrics → /model-evaluation then /analyze-stats.
• Split or preprocessing leakage → /model-validation / /preprocess-imaging.
• LLM/MLLM faithfulness & hallucination → /mllm-eval.
• Reimplementing captum / pytorch-grad-cam → out of scope (this skill wires and audits them).

The four failure modes (what the gate enforces)

• Saliency as validation. A map is *attribution*, not proof the model is correct or that the

relationship is causal. Frame it as "where signal is attributed", never as "the model is right".

• No sanity check. Run the Adebayo model-randomisation and data-randomisation tests. A map

that survives neither is uninterpretable; both axes are the minimum bar.

• No quantitative localisation. If you claim the map localises the finding, measure it — IoU /

pointing game / Dice against ground-truth masks — do not eyeball a few examples.

• Cherry-picked examples. Report a cohort-level result, not a handful of hand-picked cases.

Workflow

Phase 1 — Produce the maps (integrate, don't reimplement)

Choose the method for the architecture (references/explainability_guide.md): Grad-CAM / Grad-CAM++

for CNNs, attention-rollout for ViTs, integrated-gradients / SHAP for attribution. Wire captum or

pytorch-grad-cam; do not write a new CAM implementation.

Phase 2 — Sanity-check and quantify

• Run the model-parameter randomisation and data (label) randomisation tests (Adebayo 2018);

a faithful map degrades when the model/labels are randomised.

• Compute a quantitative localisation metric against ground-truth masks (IoU / pointing game /

Dice) over the cohort — not a visual impression.

Phase 3 — Emit the explainability-report manifest

{
  "method": "grad-cam++",
  "n_examples": 200,
  "cohort_level": true,
  "localization_metric": "iou",
  "localization_value": 0.63,
  "sanity_checks": ["model_randomization", "data_randomization"],
  "interpretation": "localization"
}

interpretation: attribution / localization / faithfulness (descriptive) — never

validation / causal (overclaim).

Phase 4 — Gate the report (deterministic)

python3 scripts/check_explainability_report.py --manifest explainability_report.json --strict

Verdicts: SALIENCY_AS_VALIDATION, NO_SANITY_CHECK, NO_LOCALIZATION_METRIC (Major);

INSUFFICIENT_SANITY, CHERRY_PICKED_EXAMPLES, MISSING_METHOD (Minor). The verdict is reproduced

by rule on the manifest, never asserted from prose.

Integration

• /model-evaluation — explainability accompanies the held-out metrics as a secondary analysis.
• /self-review ai_overclaiming / image_synthesis probes audit saliency overclaiming in a

finished manuscript; this skill *produces* the rigorous analysis they look for.

• /check-reporting — the manifest documents the CLAIM 2024 / TRIPOD+AI interpretability items.

Anti-Hallucination

• Never fabricate saliency maps, localisation metrics, or sanity-check results. Every value in the

manifest comes from the researcher's executed XAI code — never invented. This skill designs and

audits the analysis; it does not run a model on real patient data.

• Never present a saliency map as proof of model correctness or causation. A map is attribution;

claiming it validates the model is the overclaim this skill exists to prevent (SALIENCY_AS_VALIDATION).

• Never report an explainability-audit "pass" without running check_explainability_report.py. The

rigor verdict is reproduced deterministically, never asserted from prose.

• Integrate, don't reimplement. Reference captum / pytorch-grad-cam; do not write a new CAM /

attribution implementation or claim results for one.

Reproducible challenge

scripts/check_explainability_report_challenge/ ships a synthetic weak/strong report pair with a

network-free verify.sh wired into the skill's validation commands.