| (1) Creating new incremental models (choosing strategy, unique_key, partition) (2) Task mentions "incremental", "append", "merge", "upsert", or "late arriving data" (3) Troubleshooting incremental failures (merge errors, partition pruning, schema drift) (4) Optimizing incremental performance or deciding table vs incremental Guides through strategy selection, handles common incremental gotchas.
npx skills add https://github.com/AltimateAI/data-engineering-skills --skill developing-incremental-models
Choose the right strategy. Design the unique_key carefully. Handle edge cases.
| Scenario | Recommendation |
|----------|----------------|
| Source data < 10M rows | Use table (simpler, full refresh is fast) |
| Source data > 10M rows | Consider incremental |
| Source data updated in place | Use incremental with merge strategy |
| Append-only source (logs, events) | Use incremental with append strategy |
| Partitioned warehouse data | Use insert_overwrite if supported |
Default to table unless you have a clear performance reason for incremental.
--full-refresh first before relying on incremental logic# Check source table size
dbt show --inline "select count(*) from {{ source('schema', 'table') }}"
If count < 10 million, consider using table instead. Incremental adds complexity.
Before choosing a strategy, answer:
# Check for timestamp column
dbt show --inline "
select
min(updated_at) as earliest,
max(updated_at) as latest,
count(distinct date(updated_at)) as days_of_data
from {{ source('schema', 'table') }}
"
| Strategy | Use When | How It Works |
|----------|----------|--------------|
| append | Data is append-only, no updates | INSERT only, no deduplication |
| merge | Data can be updated | MERGE/UPSERT by unique_key |
| delete+insert | Data updated in batches | DELETE matching rows, then INSERT |
| insert_overwrite | Partitioned tables (BigQuery, Spark) | Replace entire partitions |
Default: merge is safest for most use cases.
Note: Strategy availability varies by adapter. Check the dbt incremental strategy docs for your specific warehouse.
CRITICAL: unique_key must be truly unique in your data.
# Verify uniqueness BEFORE creating model
dbt show --inline "
select {{ unique_key_column }}, count(*)
from {{ source('schema', 'table') }}
group by 1
having count(*) > 1
limit 10
"
If duplicates exist:
delete+insert instead of merge{{
config(
materialized='incremental',
incremental_strategy='merge', -- or append, delete+insert
unique_key='id', -- MUST be unique
on_schema_change='append_new_columns' -- handle new columns
)
}}
select
id,
column_a,
column_b,
updated_at
from {{ source('schema', 'table') }}
{% if is_incremental() %}
where updated_at > (select max(updated_at) from {{ this }})
{% endif %}
ALWAYS verify with full refresh before trusting incremental logic.
# First run: full refresh to establish baseline
dbt build --select <model_name> --full-refresh
# Verify output
dbt show --select <model_name> --limit 10
dbt show --inline "select count(*) from {{ ref('model_name') }}"
# Run incrementally (no --full-refresh)
dbt build --select <model_name>
# Verify row count changed appropriately
dbt show --inline "select count(*) from {{ ref('model_name') }}"
Set on_schema_change based on your needs:
| Setting | Behavior |
|---------|----------|
| ignore (default) | New columns in source are ignored |
| append_new_columns | New columns added to target |
| sync_all_columns | Target schema matches source exactly |
| fail | Error if schema changes |
Symptom: "Cannot MERGE with duplicate values"
Cause: Multiple rows with same unique_key in source or target.
Fix:
-- Add deduplication using a CTE (cross-database compatible)
with deduplicated as (
select *,
row_number() over (partition by id order by updated_at desc) as rn
from {{ source('schema', 'table') }}
{% if is_incremental() %}
where updated_at > (select max(updated_at) from {{ this }})
{% endif %}
)
select * from deduplicated where rn = 1
Symptom: Incremental runs take as long as full refresh.
Cause: Dynamic date filter prevents partition pruning.
Fix:
{% if is_incremental() %}
-- Use static date instead of subquery for partition pruning
where updated_at >= {{ dbt.dateadd('day', -3, dbt.current_timestamp()) }}
and updated_at > (select max(updated_at) from {{ this }})
{% endif %}
Symptom: Some records never appear in incremental model.
Cause: Filtering by max(updated_at) misses late arrivals.
Fix: Use a lookback window with a fixed offset from current date:
{% if is_incremental() %}
-- Lookback 3 days to catch late-arriving data
where updated_at >= {{ dbt.dateadd('day', -3, dbt.current_timestamp()) }}
{% endif %}
Alternatively, use a variable for the lookback period:
{% set lookback_days = 3 %}
{% if is_incremental() %}
where updated_at >= {{ dbt.dateadd('day', -lookback_days, dbt.current_timestamp()) }}
{% endif %}
Symptom: "Column X not found" after source adds column.
Fix: Set on_schema_change='append_new_columns' in config.
Symptom: Counts diverge between incremental and full refresh.
Fix: Schedule periodic full refresh:
# Weekly full refresh
dbt build --select <model_name> --full-refresh
{{ config(materialized='incremental', incremental_strategy='append') }}
select * from {{ source('events', 'raw') }}
{% if is_incremental() %}
where event_timestamp > (select max(event_timestamp) from {{ this }})
{% endif %}
{{ config(
materialized='incremental',
incremental_strategy='merge',
unique_key='id'
) }}
select * from {{ source('crm', 'contacts') }}
{% if is_incremental() %}
where updated_at > (select max(updated_at) from {{ this }})
{% endif %}
{{ config(
materialized='incremental',
incremental_strategy='delete+insert',
unique_key='id'
) }}
select * from {{ source('orders', 'raw') }}
{% if is_incremental() %}
where order_date >= {{ dbt.dateadd('day', -7, dbt.current_timestamp()) }}
{% endif %}
{{ config(
materialized='incremental',
incremental_strategy='insert_overwrite',
partition_by={'field': 'event_date', 'data_type': 'date'}
) }}
select * from {{ source('events', 'raw') }}
{% if is_incremental() %}
where event_date >= {{ dbt.dateadd('day', -3, dbt.current_timestamp()) }}
{% endif %}
--full-refreshIntegration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
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Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take altimateai/developing-incremental-models from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
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same name cannot sit side by side — one of them will be ignored.