Plan and, with explicit network consent, use an optional external Defuddle cleaner to extract article-like HTTPS pages as Markdown. Use for defuddle, clean this URL, strip page clutter, readable Markdown from a web page, or preparing a web source for later wiki ingestion.
npx skills add https://github.com/AgriciDaniel/claude-obsidian --skill defuddle
Treat Defuddle as an optional external extractor, not an internal capability.
Cleaning, raw capture, and wiki ingestion are separate operations.
Resolve the installed product root from this skill's own location, never from
the selected vault or process working directory:
PRODUCT_ROOT=/absolute/path/to/installed/claude-obsidian
CORE="$PRODUCT_ROOT/scripts/claude-obsidian.py"
test -f "$CORE"
If a separately installed kepano/obsidian-skills defuddle skill is
available, prefer it for current CLI flags. Retain the privacy, consent, and
transaction rules in this skill.
addresses, control characters, and sensitive query parameters.
approved.
access requires explicit consent in the current request or a separate
confirmation.
another network fetcher.
actual output.
Create an inert URL plan. This validates the URL and executes no network call:
python3 "$CORE" capture external-plan url "HTTPS_URL"
Report the normalized host, network egress, redirect policy, optional external
dependency, and execute: false. Then inspect whether this package can find a
configured Defuddle executable:
python3 "$CORE" contracts --verify --capability defuddle --vault VAULT
An available state means no executable was found; stop with the inert plan.
A configured state means the executable was discovered, but this package has
no bundled behavioral verifier for it. Show that state and reason, identify the
resolved executable path, and require manual review of its provenance, version,
and exact argv before execution. Never relabel configured as verified.
When unavailable or when manual review is declined, offer these honest
fallbacks: let the user install/configure an external runner, accept a local
HTML or Markdown file in inbox/, or leave the URL queued for later. Do not
claim that content was cleaned, captured, or ingested.
After network consent, configured-state detection, and manual executable
review, invoke the approved executable with an argv equivalent to:
defuddle parse HTTPS_URL --md
Capture bounded stdout in a temporary draft outside shared vault state. Fail
closed on a non-zero exit, empty output, unexpected binary output, an
unapproved redirect, or a response that is clearly an authentication/error
page. Preserve headings, links, code fences, tables, quotations, and source
wording; do not invent missing content.
Preview the cleaned Markdown and report extraction limitations. If the user
asked only to read or analyze it, keep the result transient.
When the user asks to retain the cleaned source:
.raw/captured/<sha256>.md and, when provenance metadata is needed, a new
create-only sidecar with the normalized URL, retrieval date, extractor name
and version, and content hash.
expected_hashes: null and mode: create. If that content-addressedpayload already exists with the same bytes, report a no-op; never overwrite
it.
claude-obsidian.transaction.v1 capturebundle as described in
operation-transactions.md.
Do not create wiki pages, update indexes, assess claims, or mark the source as
ingested. Invoke wiki-ingest as a distinct requested operation if the user
wants the captured payload incorporated into the knowledge base.
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
Analyzes job descriptions and generates tailored resumes that highlight relevant experience, skills, and achievements to maximize interview chances
Generate Excalidraw diagrams from natural language descriptions. Use when asked to "create a diagram", "make a flowchart", "visualize a process", "draw a system architecture", "create a mind map", or "generate an Excalidraw file". Supports flowcharts, relationship diagrams, mind maps, and system architecture diagrams. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.
Build and distribute Expo development clients locally or via TestFlight
Use when you have a written implementation plan to execute in a separate session with review checkpoints
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Take agricidaniel/defuddle from the repository into ~/.claude/skills for personal
use, or into .claude/skills inside a project.
The agent identifies a skill by the name field in its header. Two skills with the
same name cannot sit side by side — one of them will be ignored.