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Biolit MCP Server

by rachadele Your server? Claim it
local only

Biolit runs on your own machine — the client starts it, so there is no endpoint to ping. 465 installs a week from pypi. Last commit 6 Sep 2026.

LLM-assisted biomedical literature screening and extraction for PubMed, GEO, and preprints.

Installs per day peak 987 · avg 175 · -9% w/w
a month agotoday
465
Installs / week
pypi · biolit
2
Stars
1 open issues
6 Sep 2026
Last commit
0 releases in 90 days
License
Python

What the code does

We read the source, 20 h ago · rules 3dff92dd89df

Capabilities

What this server is able to do. For an MCP server this is often the job itself — a terminal server runs commands because that is what it is for. Listed so you know what you are plugging in, not as an accusation.

            r = subprocess.run(
Builds a file path from a variable [пакет] biolit/pipeline.py:726, biolit/pipeline.py:771
    paper_dir = os.path.join(artifacts_root, paper_slug)

Is this your server and something here is wrong? Tell us — corrections are free and do not require a plan.

This code can reach further than it looks

We found places where it runs commands, builds paths or queries from values it is given. None of that is a flaw by itself — it becomes one when the code changes, and code changes quietly between releases. We re-read it on every one.

Three servers free · no card

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

run in your terminal
claude mcp add biolit -- uvx biolit
~/Library/Application Support/Claude/claude_desktop_config.json
{
  "mcpServers": {
    "biolit": {
      "args": [
        "biolit"
      ],
      "command": "uvx"
    }
  }
}
~/.codex/config.toml
[mcp_servers.biolit]
command = "uvx"
args = ["biolit"]
.cursor/mcp.json
{
  "mcpServers": {
    "biolit": {
      "args": [
        "biolit"
      ],
      "command": "uvx"
    }
  }
}
.vscode/mcp.json
{
  "mcpServers": {
    "biolit": {
      "args": [
        "biolit"
      ],
      "command": "uvx"
    }
  }
}

This one needs environment variables set before it will start: ANTHROPIC_API_KEY (Anthropic API key (required when using the default Anthropic provider)), OPENAI_API_KEY (OpenAI API key (required when using LLM_PROVIDER=openai)), LLM_PROVIDER (LLM provider: anthropic (default), openai, or ollama), LLM_MODEL (Model name override (e.g. claude-sonnet-4-6, gpt-4o)), SEMANTIC_SCHOLAR_API_KEY (Semantic Scholar API key for higher rate limits on citation lookup (optional)), UNPAYWALL_EMAIL (Email address for Unpaywall API access to improve PDF retrieval (optional)). The author declared them in the registry entry; get the values from the project itself.

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Biolit — questions

Answers built from our own checks of this server.

Why is there no uptime for Biolit?
Biolit runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the pypi package biolit was installed 465 times last week.
How do I connect Biolit?
Copy the ready config from this page — we generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each with the file path that client actually reads. It runs locally, so the command pulls biolit straight from pypi; nothing to host, nothing to sign up for.
How many people use Biolit?
The pypi package biolit was installed 465 times in the last week. Week over week that is -9%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.
Is Biolit open source?
We cannot say either way: written in Python, 2 stars on GitHub and 1 open issue, but we could not determine the licence, and without one the code is not open source by default.