mcpbeat Sign in

Biolit MCP Server

by rachadele Your server? Claim it
local only

Biolit runs on your own machine — the client starts it, so there is no endpoint to ping. 168 installs a week from pypi. Last commit 23 Sep 2026.

LLM-assisted biomedical literature screening and extraction for PubMed, GEO, and preprints.

Installs per day peak 329 · avg 52 · -42% w/w
a month agotoday
168
Installs / week
pypi · biolit
2
Stars
1 open issue
23 Sep 2026
Last commit
from GitHub
—
License
Python

What the code does

We read the source, 3 d ago · rules 995398eba69f

Capabilities

What this server is able to do. For an MCP server this is often the job itself — a terminal server runs commands because that is what it is for. Listed so you know what you are plugging in, not as an accusation.

            r = subprocess.run(
Builds a file path from a variable [пакет] biolit/pipeline.py:726, biolit/pipeline.py:771
    paper_dir = os.path.join(artifacts_root, paper_slug)

Is this your server and something here is wrong? Tell us — corrections are free and do not require a plan.

This code can reach further than it looks

We found places where it runs commands, builds paths or queries from values it is given. None of that is a flaw by itself — it becomes one when the code changes, and code changes quietly between releases. We re-read it on every one.

Three servers free · no card

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

run in your terminal
claude mcp add biolit -- uvx biolit
~/Library/Application Support/Claude/claude_desktop_config.json
{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ]
    }
  }
}
~/.codex/config.toml
[mcp_servers.biolit]
command = "uvx"
args = ["biolit"]
.cursor/mcp.json
{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ]
    }
  }
}
.vscode/mcp.json
{
  "servers": {
    "biolit": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "biolit"
      ]
    }
  }
}

Optional settings from the registry entry, left out of the block above: ANTHROPIC_API_KEY (Anthropic API key (required when using the default Anthropic provider)), OPENAI_API_KEY (OpenAI API key (required when using LLM_PROVIDER=openai)), LLM_PROVIDER (LLM provider: anthropic (default), openai, or ollama), LLM_MODEL (Model name override (e.g. claude-sonnet-4-6, gpt-4o)), SEMANTIC_SCHOLAR_API_KEY (Semantic Scholar API key for higher rate limits on citation lookup (optional)), UNPAYWALL_EMAIL (Email address for Unpaywall API access to improve PDF retrieval (optional)).

Alternatives to Biolit

same job, measured the same way
Caliper
by caliper

Geometry and CAD file metadata extraction for STL, OBJ, PLY, PCD, LAS/LAZ, glTF/GLB.

10 tools answering
XeoRank
by xeorank

SEO, AEO and GEO audits, rank tracking, AI-citation scans and WordPress editing for any site.

answering
LLM Pulse
by llm-pulse

AI visibility analytics for brand mentions, citations, sentiment, and GEO reports

answering
V³ News
by v3

Cited geopolitical events, multi-perspective briefs, and live breaking news from V³ News.

7 tools answering
AI SEO
by automatelab-tech

MCP server for AI-SEO auditing: schema, robots.txt, llms.txt, citation scoring, and AEO/GEO rewrites

80 installs/wk local only
Planwire MCP
by beshogun

UK planning application data for AI agents: search, geo-query and fetch applications.

46 installs/wk local only
Geo Explorer MCP
by arnienemeth

Country facts, administrative boundaries and regional statistics, for interactive geography.

95 installs/wk local only
Copix
by copix

Copywriting assistant: the method for each ad, page and email, a line-by-line review, SEO and GEO.

answering

Biolit — questions

Answers built from our own checks of this server.

Why is there no uptime for Biolit?
Biolit runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the pypi package biolit was installed 168 times last week.
How do I connect Biolit?
Copy the ready config from this page. We generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each in the form that client actually reads. It runs locally, so the command pulls biolit straight from pypi; nothing to host, nothing to sign up for.
How many people use Biolit?
The pypi package biolit was installed 168 times in the last week. Week over week that is -42%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.
Is Biolit open source?
We cannot say either way: written in Python, 2 stars on GitHub and 1 open issue, but we could not determine the licence, and without one the code is not open source by default.