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Oliver's mTOR Atlas MCP Server

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Oliver's mTOR Atlas is answering right now. Last checked 7 min ago. 73 installs a week from npm. It exposes 13 tools. Last commit 7 Nov 2026.

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

Installs per day peak 647 · avg 32
a month agotoday
Uptime history 38 days of history
38 days agonow
100.0%
Uptime 24h
91 of 91 checks
13
Tools
read from the server
182 ms
Response time
average over 24h
73
Installs / week
npm and PyPI

What changed 33

Every tool that appeared, vanished or quietly changed what it asks for. Recorded since 3 October 2026. No other catalogue keeps this.

6 Nov a tool description was rewritten find_contradictions
1 Nov a tool description was rewritten get_author
25 Oct a tool changed the parameters it asks for get_study
17 Oct 2 tool descriptions were rewritten atlas_about, find_contradictions
17 Oct a tool changed version
15 Oct 3 tools changed the parameters they ask for get_study, list_questions, search_studies
15 Oct 2 tool descriptions were rewritten get_study, search_studies
15 Oct 2 tools appeared get_author, search_authors
15 Oct a tool changed version
13 Oct 8 tools changed the parameters they ask for11 times that day evidence_between, find_contradictions, find_relations and 5 more
and 11 more, back to 3 October 2026

What the code does

We read the source, 7 h ago · tools taken from the live server · rules 995398eba69f

Capabilities

What this server is able to do. For an MCP server this is often the job itself — a terminal server runs commands because that is what it is for. Listed so you know what you are plugging in, not as an accusation.

      const v = JSON.parse(await readFile(path.join(root, rel), 'utf-8'));
In the project's build, not in the package

Found in continuous integration, deployment or infrastructure files, or in a neighbouring package of the same monorepo. None of this is installed when you add the server: it describes how the project is built and released. We list it because a leaked key in a build pipeline is still a real problem, but it is not something this server does on your machine.

A line of code looks encrypted academy/free-courses/index.html:1286
</footer><style>.ac-lg-buck{background-image:url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAFAAAABQCAMAAAC5zwKfAAAAkFBMVEX////+///+//79/////v/+/v/+/v78/v71+fzw9vrv9fru9fru9fnt9fnp8vjb6vPK4O6z0eWfxd+CtNVqps1lostbnMhIkcI6h70zhLobdrIMbK0FaKoDZqoCZqoCZqkBZqoBZqkAZqkDZakBZakAZakBZ…
Unsafe deserialization atlas_rag/query.py:24
        _vec=pickle.load(open(os.path.join(IDX,"tfidf_vectorizer.pkl"),"rb"))
    subprocess.run([sys.executable, os.path.join(HERE, "bake_from_mcp.py")], check=True, cwd=HERE)
Executes code built at runtime pathway/smoke_test.js:82
w.eval(src);
function h(t,c,html){var n=document.createElement(t);if(c)n.className=c;if(html!=null)n.innerHTML=html;return n;}

Is this your server and something here is wrong? Tell us — corrections are free and do not require a plan.

This code can reach further than it looks

We found places where it runs commands, builds paths or queries from values it is given. None of that is a flaw by itself — it becomes one when the code changes, and code changes quietly between releases. We re-read it on every one.

Three servers free · no card

Connect this server

Endpoint below is the one we actually reach during checks — not the one copied from a README. Last verified 7 min ago.

run in your terminal
claude mcp add mtor-atlas --transport http https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp
Settings → Connectors → Add custom connector, then paste this address
https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp
~/.codex/config.toml
[mcp_servers.mtor-atlas]
url = "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
.cursor/mcp.json
{
  "mcpServers": {
    "mtor-atlas": {
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}
.vscode/mcp.json
{
  "servers": {
    "mtor-atlas": {
      "type": "http",
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Available tools 13

Read directly from the server with tools/list, grouped by what they act on. If a tool disappears, we record the date.

atlas
atlas_about
Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. When the Atlas does not report the contested and conflicting counts itself, derived_counts adds them, computed from the relations, so they can be compared with find_contradictions.
author
get_author
One profiled author by profile id ("claudio-de-virgilio"), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the Atlas. If the name fits several people or has no profile page, the answer lists candidates (resolved: false) instead.
authors
search_authors
People in the Atlas by full name ("Claudio De Virgilio"), author-list form ("De Virgilio C"), ORCID or lab. results are authors with a profile page (full name, ORCID, lab, their study IDs); in_author_lists are matching names in study author lists without a profile.
contradictions
find_contradictions
Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. conflict carries WHY the studies disagree (Opposing result / Different context / Field dispute) with its basis. A contested relation with no conflicting study listed is flagged conflicting_studies_missing, and data_note says whether that is a real gap (Opposing result) or the recorded state because two published models compete (Field dispute, Different context); relations named in its note or boundary are shown in named_in_text (a mention is not evidence). Paged: pass next_offset as offset for the rest. Optionally limited to one entity.
entities
search_entities
Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched (match_field: name, synonym or description); use match="name" to leave out description-only hits.
entity
get_entity
One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.
evidence
evidence_between
Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?". A study that repeats within the answer is sent in full once and afterwards as a short card with full_card_in.
question
get_question
One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.
questions
list_questions
The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions. Paged. By default still_open is shortened at a sentence boundary (still_open_truncated); get_question has the full text, or pass brief=false.
relation
get_relation
One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.
relations
find_relations
Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.
studies
search_studies
Search the curated studies by keywords, optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Searches title, finding, authors (author-list form "Sabatini DM" and full names of profiled authors), PMID, DOI, PMCID, linked entities and their synonyms, journal, model system and the abstract excerpt. A query that is a PMID or DOI returns that study. Returns summary records with evidence codes and URLs.
study
get_study
Full record for one study by Atlas ID (e.g. "SAB1994"), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.

Endpoints

URLTransportStateLatencyChecked
https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp streamable-http answering 89 ms 7 min ago

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Oliver's mTOR Atlas — questions

Answers built from our own checks of this server.

What can Oliver's mTOR Atlas do?
It exposes 13 tools, read directly from the server on our last check. Among them: atlas_about, evidence_between, find_contradictions, find_relations, get_author, get_entity and 7 more. The full list with descriptions is on this page — we take it from the server itself via tools/list, not from a README. How MCP servers expose tools in the first place →
Is Oliver's mTOR Atlas working right now?
We send a real MCP handshake every 15 minutes. Over the last 24 hours 91 of 91 checks got a reply (100.0%), average response time 182 ms. The bar chart above shows every period we have measured.
How do I connect Oliver's mTOR Atlas?
Copy the ready config from this page. We generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each in the form that client actually reads. It is a remote server, so there is nothing to install — the client connects to the address.
Does Oliver's mTOR Atlas need an API key?
No. Oliver's mTOR Atlas completed a full MCP handshake with us as an anonymous client and listed its tools without asking for anything. All 13 of them are readable on this page. This is what we observed, not what the docs claim.
How fast is Oliver's mTOR Atlas?
It answers our handshake in 182 ms on average, which is faster than 75% of all working MCP servers we measure. That puts it in the quick quarter of the ecosystem. The comparison comes from our own checks across the whole registry, every 15 minutes.
How many people use Oliver's mTOR Atlas?
The npm package mtor-atlas-mcp was installed 73 times in the last week. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.
Is Oliver's mTOR Atlas open source?
The code is open source: it is published under the MIT licence, written in HTML and 0 stars on GitHub. The licence covers the code in the repository, not the hosted service at mtor-atlas-mcp.mtor-atlas.workers.dev, which runs on its operator's own terms.