Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP Server

by k-dense-ai Your server? Claim it

local only

Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) runs on your own machine — the client starts it, so there is no endpoint to ping. 180 installs a week from pypi. Last commit 27 Sep 2026.

MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

Installs per day peak 492 · avg 34 · -25% w/w

a month agotoday

180

Installs / week

pypi · labmcp-ms-data

Stars

0 open issues

27 Sep 2026

Last commit

from GitHub

Apache-2.0

License

Python

Nothing serious here today

Today is the operative word: we check Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) every 15 minutes and re-read its code on every release. Watch it and you find out the day that stops being true.

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

Claude Code Claude Desktop Codex Cursor VS Code

run in your terminal

claude mcp add labmcp-ms-data -- uvx labmcp-ms-data

~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data"
      ],
      "command": "uvx"
    }
  }
}

~/.codex/config.toml

[mcp_servers.labmcp-ms-data]
command = "uvx"
args = ["labmcp-ms-data"]

.cursor/mcp.json

{
  "mcpServers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data"
      ],
      "command": "uvx"
    }
  }
}

.vscode/mcp.json

{
  "mcpServers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data"
      ],
      "command": "uvx"
    }
  }
}

This one needs environment variables set before it will start: LABMCP_ADDRESS (Instrument address, e.g. serial:///dev/ttyUSB0 or tcp://192.168.1.50:5025), LABMCP_SIMULATE (Set to 1 to use the built-in simulator (no hardware)), LABMCP_READ_ONLY (Set to 1 to disable all state-changing tools), LABMCP_LIMITS (Safety limit overrides, e.g. max_temperature_c=80). The author declared them in the registry entry; get the values from the project itself.

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Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) — questions

Answers built from our own checks of this server.

Why is there no uptime for Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)?

Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the pypi package labmcp-ms-data was installed 180 times last week.

How do I connect Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)?

Copy the ready config from this page — we generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each with the file path that client actually reads. It runs locally, so the command pulls labmcp-ms-data straight from pypi; nothing to host, nothing to sign up for.

How many people use Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)?

The pypi package labmcp-ms-data was installed 180 times in the last week. Week over week that is -25%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.

Is Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) open source?

Yes — it is published under the Apache-2.0 licence, written in Python and 19 stars on GitHub. The source link is on this page, so you can read exactly what it does with your data before you connect it.