Galaxy MCP runs on your own machine — the client starts it, so there is no endpoint to ping. 302 installs a week from pypi. Last commit 17 Sep 2026.
MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows
We read the source, 22 h ago · rules 3dff92dd89df
What this server is able to do. For an MCP server this is often the job itself — a terminal server runs commands because that is what it is for. Listed so you know what you are plugging in, not as an accusation.
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We found places where it runs commands, builds paths or queries from values it is given. None of that is a flaw by itself — it becomes one when the code changes, and code changes quietly between releases. We re-read it on every one.
This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.
claude mcp add galaxy-mcp -- uvx galaxy-mcp
{
"mcpServers": {
"galaxy-mcp": {
"args": [
"galaxy-mcp"
],
"command": "uvx"
}
}
}
[mcp_servers.galaxy-mcp]
command = "uvx"
args = ["galaxy-mcp"]
{
"mcpServers": {
"galaxy-mcp": {
"args": [
"galaxy-mcp"
],
"command": "uvx"
}
}
}
{
"mcpServers": {
"galaxy-mcp": {
"args": [
"galaxy-mcp"
],
"command": "uvx"
}
}
}
This one needs environment variables set before it will start:
GALAXY_URL (URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)), GALAXY_API_KEY (API key for authenticating with the Galaxy instance).
The author declared them in the registry entry; get the values from the project itself.
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Answers built from our own checks of this server.