Claude Scientific Skills

microck/claude-scientific-skills

Comprehensive collection of 128+ ready-to-use scientific skills for Claude enabling research across biology, chemistry, medicine, genomics, and advanced analysis domains.

2673k tokens

context cost

the whole folder, loaded on every use

861

files

ships runnable scripts

copies elsewhere

how many repositories repackaged it

320

stars on the repo

on the repository, not the skill itself

Install

one command, takes just this skill from the repository

npx skills add https://github.com/Microck/ordinary-claude-skills --skill claude-scientific-skills

What comes with it

504 349 bytes besides the instruction

.claude-plugin/marketplace.json

.github/workflows/release.yml

.gitignore

LICENSE.md

README.md

docs/examples.md

docs/scientific-skills.md

scientific-skills/adaptyv/reference/api_reference.md

scientific-skills/adaptyv/reference/examples.md

scientific-skills/adaptyv/reference/experiments.md

scientific-skills/adaptyv/reference/protein_optimization.md

scientific-skills/aeon/references/anomaly_detection.md

scientific-skills/aeon/references/classification.md

scientific-skills/aeon/references/clustering.md

scientific-skills/aeon/references/datasets_benchmarking.md

scientific-skills/aeon/references/distances.md

scientific-skills/aeon/references/forecasting.md

scientific-skills/aeon/references/networks.md

scientific-skills/aeon/references/regression.md

scientific-skills/aeon/references/segmentation.md

scientific-skills/aeon/references/similarity_search.md

scientific-skills/aeon/references/transformations.md

scientific-skills/alphafold-database/references/api_reference.md

scientific-skills/anndata/references/best_practices.md

scientific-skills/anndata/references/concatenation.md

scientific-skills/anndata/references/data_structure.md

scientific-skills/anndata/references/io_operations.md

scientific-skills/anndata/references/manipulation.md

scientific-skills/arboreto/references/algorithms.md

scientific-skills/arboreto/references/basic_inference.md

scientific-skills/arboreto/references/distributed_computing.md

scientific-skills/arboreto/scripts/basic_grn_inference.py

scientific-skills/astropy/references/coordinates.md

scientific-skills/astropy/references/cosmology.md

scientific-skills/astropy/references/fits.md

scientific-skills/astropy/references/tables.md

scientific-skills/astropy/references/time.md

scientific-skills/astropy/references/units.md

scientific-skills/astropy/references/wcs_and_other_modules.md

scientific-skills/benchling-integration/references/api_endpoints.md

The instruction itself

14 sections, as written by the author

Claude Scientific Skills Collection

A comprehensive collection of 128+ ready-to-use scientific skills that transforms Claude into an AI research assistant capable of executing complex multi-step scientific workflows.

Scientific Domains

🧬 Bioinformatics & Genomics

Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant annotation, phylogenetic analysis

🧪 Cheminformatics & Drug Discovery

Molecular property prediction, virtual screening, ADMET analysis, molecular docking, lead optimization

🔬 Proteomics & Mass Spectrometry

LC-MS/MS processing, peptide identification, spectral matching, protein quantification

🏥 Clinical Research & Precision Medicine

Clinical trials, pharmacogenomics, variant interpretation, drug safety, precision therapeutics

🧠 Healthcare AI & Clinical ML

EHR analysis, physiological signal processing, medical imaging, clinical prediction models

🖼️ Medical Imaging & Digital Pathology

DICOM processing, whole slide image analysis, computational pathology, radiology workflows

🤖 Machine Learning & AI

Deep learning, reinforcement learning, time series analysis, model interpretability, Bayesian methods

🔮 Materials Science & Chemistry

Crystal structure analysis, phase diagrams, metabolic modeling, computational chemistry

🌌 Physics & Astronomy

Astronomical data analysis, cosmological calculations, symbolic mathematics, physics computations

⚙️ Engineering & Simulation

Discrete-event simulation, optimization, metabolic engineering, systems modeling

Included Skill Categories

26+ Scientific Databases - OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov
54+ Python Packages - RDKit, Scanpy, PyTorch, scikit-learn, BioPython, PennyLane, Qiskit
15+ Scientific Integrations - Benchling, DNAnexus, LatchBio, OMERO, Protocols.io
20+ Analysis & Communication Tools - Literature review, scientific writing, peer review

Getting Started

Each skill within this collection includes:

Comprehensive documentation (SKILL.md)
Practical code examples
Use cases and best practices
Integration guides
Reference materials

Explore the scientific-skills/ subdirectory for individual skill implementations and detailed documentation.

How to use it

Copy the folder

Take microck/claude-scientific-skills from the repository into ~/.claude/skills for personal use, or into .claude/skills inside a project.

Check the name does not clash

The agent identifies a skill by the name field in its header. Two skills with the same name cannot sit side by side — one of them will be ignored.