Papers

Academic Papers Search

When To Use

• Finding academic papers, citations, or formal research
• Building literature reviews or citation chains

When NOT To Use

• Community opinions (use /tome:discourse)
• Code implementations (use /tome:code-search)

Search arXiv, Semantic Scholar, and open-access sources.

Sources (Priority Order)

• arXiv API (free, unlimited metadata)
• Semantic Scholar API (100 req/5min, citation graphs)
• Unpaywall (legal free version discovery)
• CORE.ac.uk (open-access aggregator)
• PubMed Central (biomedical)
• Author preprint pages (WebSearch fallback)

PDF Processing

After acquiring a paper URL or local file path, convert

the PDF to markdown for better extraction quality.

Conversion (prefer markitdown)

Apply the leyline:document-conversion protocol:

• Try markitdown first: call the MCP convert_to_markdown

tool with the PDF URL or file:// path. This produces

structured markdown preserving tables, equations, figures,

and section hierarchy.

• Fall back to Read tool if markitdown is unavailable:
• Read with pages: "1-20" for the first chunk
• Continue with pages: "21-40" for longer papers
• Continue in 20-page increments as needed
• Note: tables and figures will not extract as cleanly

Extraction Targets

From the converted markdown, extract:

• Abstract and key findings
• Methodology and experimental setup
• Results tables and figures
• Citation information (authors, year, venue)
• Key equations or formal definitions

Fallback Guidance

When a paper is paywalled and no open version exists:

• Public library JSTOR/ProQuest access via library card
• DeepDyve article rental
• Inter-library loan request
• Direct author email template

Exit Criteria

• [ ] At least one academic source queried in priority order

(arXiv first, then Semantic Scholar, then Unpaywall/CORE/PubMed)

• [ ] PDF content converted via leyline:document-conversion

protocol: markitdown MCP attempted first, Read-tool fallback

used if markitdown is unavailable

• [ ] Each paper result includes citation info (authors, year, venue)

and an abstract or key findings summary

• [ ] Paywalled papers with no open version trigger the fallback

guidance (library, DeepDyve, ILL, author contact) rather than

returning an empty result

• [ ] If all sources return zero results, this is stated explicitly

rather than generating fabricated paper entries