mcpbeat

ENCODE Toolkit MCP Server

io.github.ammawla/encode-toolkit
local only

ENCODE Toolkit runs on your own machine — the client starts it, so there is no endpoint to ping. 112 installs a week from pypi. Last commit 21 Jun 2026.

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

Installs per day peak 36 · avg 10 · +51% w/w
a month agotoday
112
Installs / week
npm · encode-toolkit
29
Stars
0 open issues
21 Jun 2026
Last commit
0 releases in 90 days
AGPL-3.0
License
Python

Connect this server

This server runs on your own machine — install it with the package manager and the client starts it for you. Package name taken from the official registry entry.

run in your terminal
claude mcp add encode-toolkit -- npx -y encode-toolkit
~/Library/Application Support/Claude/claude_desktop_config.json
{
  "mcpServers": {
    "encode-toolkit": {
      "args": [
        "-y",
        "encode-toolkit"
      ],
      "command": "npx"
    }
  }
}
~/.codex/config.toml
[mcp_servers.encode-toolkit]
command = "npx"
args = ["-y", "encode-toolkit"]
.cursor/mcp.json
{
  "mcpServers": {
    "encode-toolkit": {
      "args": [
        "-y",
        "encode-toolkit"
      ],
      "command": "npx"
    }
  }
}
.vscode/mcp.json
{
  "mcpServers": {
    "encode-toolkit": {
      "args": [
        "-y",
        "encode-toolkit"
      ],
      "command": "npx"
    }
  }
}

ENCODE Toolkit — questions

Answers built from our own checks of this server.

Why is there no uptime for ENCODE Toolkit?
ENCODE Toolkit runs on your own machine over stdio — there is no network address to reach, so uptime cannot be measured for it by anyone. What can be measured is adoption: the npm package encode-toolkit was installed 112 times last week.
How do I connect ENCODE Toolkit?
Copy the ready config from this page — we generate it for Claude Code, Claude Desktop, Codex, Cursor and VS Code, each with the file path that client actually reads. It runs locally, so the command pulls encode-toolkit straight from npm; nothing to host, nothing to sign up for.
How many people use ENCODE Toolkit?
The npm package encode-toolkit was installed 112 times in the last week. Week over week that is +51%. We show installs rather than GitHub stars on purpose: a star is a bookmark, an install is someone actually running it.
Is ENCODE Toolkit open source?
Yes — it is published under the AGPL-3.0 licence, written in Python and 29 stars on GitHub. The source link is on this page, so you can read exactly what it does with your data before you connect it.